| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,634 | C→T | 33.8% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,634 | 0 | C | T | 33.8% | 139.0 / 107.2 | 126 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (42/40); new base T (20/22); total (64/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
Only 100 of 139 total aligned reads displayed.
GATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195488‑195780 | gATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacca‑ccac > 1:259047/1‑149 (MQ=39) aTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACacca‑ccacc > 2:100400/1‑149 (MQ=39) ccAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGa > 6:32959/1‑149 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGAcc > 2:638/1‑149 (MQ=39) acaccGGCAAATGACGTCTACAACAACGGTTCGACCTTAAGCGTCACCATCGAGAACTACACCGGAGTTAATTTCTAGAAAATGACAACGAATAAGACCCCGGCTAAGACCCAGATCAACTACTCGGTCGACACCA‑CCACAGAGAca > 1:45595/4‑146 (MQ=2) gCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGc < 1:100400/149‑1 (MQ=39) gaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGa < 6:197581/148‑1 (MQ=14) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGcc > 8:230937/1‑149 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGcc < 6:290974/149‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGA‑CCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAg < 8:19512/146‑1 (MQ=12) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCg > 5:81256/1‑149 (MQ=17) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGACgg > 5:362105/1‑149 (MQ=37) tACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGt > 7:276624/1‑149 (MQ=37) accaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 8:83881/147‑1 (MQ=12) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 3:199712/149‑1 (MQ=37) acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc < 8:272666/149‑1 (MQ=37) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCCACCGCGACCCTGACGGCGAGCCCGTCg < 1:22021/143‑1 (MQ=255) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCg > 2:22021/1‑142 (MQ=37) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGa > 4:103161/1‑121 (MQ=38) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 5:202857/149‑1 (MQ=17) gTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc < 7:23364/149‑1 (MQ=37) ttCGACCGTCACCCTCACCATCGAGAACGCCACCGGCGGTAATTTCCAGCAACAGACCCCCAATCCGACCCCGGCTCAGACCACGAACAACGACTCCGTCCACACCA‑CCACCGCCACCCACACGGCGACCCCGTCGCTCACCGAAggcg > 3:371478/1‑149 (MQ=11) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg < 4:97381/149‑1 (MQ=12) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 4:20310/1‑149 (MQ=17) aCCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:4916/1‑149 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:308264/1‑146 (MQ=37) ccGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 4:308264/146‑1 (MQ=37) tCAGCGTCACCATCGAGACCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc < 5:377547/149‑1 (MQ=12) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCCCGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 6:306043/1‑134 (MQ=255) cAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCAAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg < 5:306043/134‑1 (MQ=37) gTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa < 5:89026/149‑1 (MQ=39) tCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTa > 2:61714/1‑148 (MQ=39) cATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 1:295557/140‑1 (MQ=37) tCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTg < 5:4916/149‑1 (MQ=39) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:59558/1‑148 (MQ=17) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 1:61714/149‑1 (MQ=39) agaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 3:308689/1‑149 (MQ=39) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 2:59558/149‑1 (MQ=17) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:264594/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:276624/149‑1 (MQ=39) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 8:311171/149‑1 (MQ=39) ccACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAg > 8:202635/1‑148 (MQ=39) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa > 8:331073/1‑146 (MQ=17) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 7:331073/146‑1 (MQ=17) cACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGc > 2:37271/1‑148 (MQ=39) acaggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa < 8:58657/146‑1 (MQ=17) caggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc > 8:190744/3‑149 (MQ=17) aggcggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc < 3:197867/148‑1 (MQ=18) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc > 2:240263/1‑149 (MQ=17) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc < 2:212494/149‑1 (MQ=21) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 4:273482/132‑1 (MQ=37) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa > 3:273482/1‑132 (MQ=37) gTAATTTCGAGCAACTGACCCCGAATCCGACACCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc > 7:117368/1‑149 (MQ=17) aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa < 1:240263/148‑1 (MQ=17) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa > 5:257976/1‑149 (MQ=39) gAGCAAGTGACCCGGAATCCGACCCCGGCTCAGACGACGATCAAGGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGGAAccg < 3:348918/137‑2 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CAACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATAACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGcc > 3:21978/1‑149 (MQ=255) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCAA‑CAACCGCCACCCTGACGGCGACCCCGTCGGTCACCGAAGCCGGCGTGATCACTTACACCGTGACACTGAGCAAccc > 4:348918/1‑137 (MQ=11) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGc < 8:117368/148‑1 (MQ=21) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCg < 6:257976/149‑1 (MQ=39) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt < 5:34930/146‑1 (MQ=17) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt > 6:34930/1‑146 (MQ=17) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCg > 2:353320/1‑149 (MQ=9) aCCCCGAATCCGACCCCGGCTCAGACCACGATCGACGACTCGGGCGACACCA‑CCACCGCGACCCTGACGGCGCGCCCGTCGGTCACCGAAGGCGGCGTGATCGCTTACACCGTGACCCGGAGCACCCCTGCCCAGACTCCGGTAAcag > 4:37936/1‑146 (MQ=14) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGt > 4:112877/1‑148 (MQ=12) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 7:325609/99‑1 (MQ=37) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 6:48093/1‑95 (MQ=37) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 7:202635/149‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa < 7:197272/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGacc < 1:149886/149‑3 (MQ=2) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc > 7:250074/1‑113 (MQ=17) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc < 8:250074/113‑1 (MQ=17) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 5:206616/149‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc < 6:81256/149‑1 (MQ=255) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTcc > 8:79819/1‑148 (MQ=255) aCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCaa > 1:137434/1‑149 (MQ=255) cGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGc > 3:106908/1‑149 (MQ=37) gCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGcc > 7:11031/1‑148 (MQ=39) tCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa > 2:361253/1‑149 (MQ=39) gACCACGATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa > 6:18049/1‑149 (MQ=38) cACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 4:72199/1‑149 (MQ=39) cACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa > 4:182712/1‑149 (MQ=39) gATCAACGACTCGGTCGACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg > 5:124352/1‑149 (MQ=255) tCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt < 5:114404/149‑1 (MQ=39) tCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 3:304490/1‑149 (MQ=21) tCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg > 3:153016/1‑149 (MQ=39) gTCGACACCA‑CTACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa > 6:102494/1‑148 (MQ=255) gTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGt > 5:67156/1‑147 (MQ=39) gACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc < 6:196795/140‑1 (MQ=255) gACACCA‑CTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGc > 5:196795/1‑140 (MQ=255) acca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg < 7:81061/115‑1 (MQ=255) cca‑ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg < 1:361253/149‑1 (MQ=39) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt < 4:120561/107‑1 (MQ=255) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt > 3:120561/1‑107 (MQ=255) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa < 7:91382/133‑1 (MQ=255) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGaa > 8:91382/1‑133 (MQ=255) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 2:270293/1‑149 (MQ=255) ca‑ctaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGATGAACCGGGAAAAAcaaagg > 8:301521/1‑144 (MQ=14) ca‑ccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg > 1:69098/1‑149 (MQ=39) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAggg > 7:345917/1‑147 (MQ=39) | GATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCA‑CCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG > NC_002947/195488‑195780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |