Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,204,071 | C→T | 7.0% | R250W (CGG→TGG) | PP_1948 → | benzaldehyde dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,204,071 | 0 | C | T | 7.0% | 169.8 / 2.3 | 57 | R250W (CGG→TGG) | PP_1948 | benzaldehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (24/29); new base T (2/2); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-01 |
CCAGTTCGCGGAACTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAACACTGGTC > NC_002947/2203923‑2204215 | ccAGTTCGCGGAACTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTACGTGCCGGAc > 3:71020/1‑149 (MQ=255) gTTCGCGGAACTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACgg > 2:66621/1‑148 (MQ=255) ggAACTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTGTCTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATc < 1:54178/149‑1 (MQ=255) cTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCaa < 6:62692/149‑1 (MQ=255) cTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTAAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCaa < 7:270062/149‑1 (MQ=255) tgAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTcgcc < 2:134552/149‑1 (MQ=255) gagGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCg < 7:199698/133‑1 (MQ=255) gagGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCg > 8:199698/1‑133 (MQ=255) gCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCg < 3:318542/149‑1 (MQ=255) ttGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGcatcat > 1:256124/1‑149 (MQ=255) gCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTc > 5:178626/1‑149 (MQ=255) ccaccaGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTcc > 4:258943/1‑149 (MQ=255) caGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTg > 2:234090/1‑149 (MQ=255) aGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGt < 3:234820/149‑1 (MQ=255) gCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCg < 5:355008/149‑1 (MQ=255) gCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCg < 3:352190/149‑1 (MQ=255) aaCGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGATGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAAtt > 3:175343/1‑149 (MQ=255) aaCGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGATGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAAtt > 3:180943/1‑149 (MQ=255) cGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTgg < 6:178626/149‑1 (MQ=255) tGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGggc < 6:70906/149‑1 (MQ=255) ccGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCaaa < 3:258943/149‑1 (MQ=255) cGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAAt > 7:238079/1‑149 (MQ=255) gTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGaa > 8:121211/1‑148 (MQ=255) gTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGaa > 3:175613/1‑148 (MQ=255) ggAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTg < 1:234090/149‑1 (MQ=255) cGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTTGGCGGCAAATCCCCGAACATTGTCTTCg < 2:256124/149‑1 (MQ=255) cGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTc > 7:25915/1‑148 (MQ=255) gTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGaa < 8:238079/149‑1 (MQ=255) tctGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTc > 8:128084/1‑106 (MQ=255) tctGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTc < 7:128084/106‑1 (MQ=255) ctGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTc < 8:125173/138‑1 (MQ=255) ctGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTc > 7:125173/1‑138 (MQ=255) gTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCtt < 2:17055/134‑1 (MQ=255) gTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCtt > 1:17055/1‑134 (MQ=255) aaCACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCTAATCCCCAAACATTGTCTTCGAAGACGCAGATCTGGa < 1:66621/148‑1 (MQ=255) aaCACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGAt > 1:186805/1‑149 (MQ=255) aTCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTc < 4:23077/147‑1 (MQ=255) tCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTcgcg > 5:175812/1‑149 (MQ=255) aaaGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTcgc < 4:295462/144‑1 (MQ=255) aaaGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTcgc > 3:295462/1‑144 (MQ=255) aaaGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTa < 6:328415/149‑1 (MQ=255) aGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGc < 7:121211/149‑1 (MQ=255) tttCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTg > 3:185793/1‑149 (MQ=255) aCCGGTTCTGTCCGTGCCGGATGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCtt < 4:175343/149‑1 (MQ=255) aCCGGTTCTGTCCGTGCCGGATGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCtt < 4:180943/149‑1 (MQ=255) aCCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCtt > 7:238110/1‑149 (MQ=255) cGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTCTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCa > 3:206247/1‑149 (MQ=255) ttCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCg > 7:305115/1‑149 (MQ=255) cTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCgc < 4:71020/148‑2 (MQ=255) gTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGaa > 4:233423/1‑96 (MQ=255) gTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGaa < 3:233423/96‑1 (MQ=255) tCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCaa > 4:207746/1‑148 (MQ=255) cGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAaca < 4:185793/148‑1 (MQ=255) gTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGa > 2:316340/1‑110 (MQ=255) gTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGa < 1:316340/110‑1 (MQ=255) gTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAACACt < 7:212660/149‑1 (MQ=255) ccGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAACACTGGt > 4:47215/1‑149 (MQ=255) cGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTCTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAACACTGGTc < 4:206247/149‑1 (MQ=255) | CCAGTTCGCGGAACTGGTTGTGAAAGAGGCAGGGTTGCCACCAGGCGTATTGAACGTGGTTACCGGCACCGGTAAGGAAACCGGTGAGCCTCTGGTTAAACACCCTCTGATCCGAAAGGTTG‑CTTTCACCGGTTCTGTCCGTGCCGGACGGGAGATCGGCAAGCTCGCCGCAGATCGCATCATTCCGCTGTCGCTCGAATTGGGCGGCAAATCCCCGAACATTGTCTTCGAAGACGCAGATCTGGATCGAGCTGTCGCGGGTAGCGTCTTTGCCTTCACCGTCAACACTGGTC > NC_002947/2203923‑2204215 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |