BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,311,048	G→A	6.0%	V267I (GTA→ATA) ‡	PP_2033 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,311,048	0	G	A	6.0%	310.3 / 5.3	100	V267I (GTA→ATA) ‡	PP_2033	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (52/42); new base A (2/4); total (54/46)
Fisher's exact test for biased strand distribution p-value = 4.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

CGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGGCGCAAAAG  >  NC_002947/2310900‑2311194

cGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTCTGCAAGCCGCAGTCCCAGTGCGTGCCTg                                                                                                                                                      >  7:132809/1‑149 (MQ=255)

     aCGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGTGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGc                                                                                                                                                <  7:280342/149‑1 (MQ=255)

             cggcATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTACA‑GGCAcgcactg                                                                                                                                        <  6:115404/149‑5 (MQ=255)

              ggcATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGCGCGTGCCTACA‑GGCAcgcactgg                                                                                                                                       <  2:157356/149‑6 (MQ=255)

                   aaCTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAg                                                                                                                                    >  7:143073/1‑147 (MQ=255)

                    aCTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCa                                                                                                                                  <  3:268791/148‑1 (MQ=255)

                     cTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCAc                                                                                                                                              >  8:307358/1‑135 (MQ=255)

                     cTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCAc                                                                                                                                              <  7:307358/135‑1 (MQ=255)

                      ttCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCACCTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGt                                                                                                                                >  1:273805/1‑149 (MQ=255)

                      ttCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTg                                                                                                                               >  5:347461/1‑149 (MQ=255)

                      ttCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTACA‑GGCAcgcactggg                                                                                                                                      >  4:154201/1‑136 (MQ=255)

                      ttCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTACA‑GGCAcgcactggg                                                                                                                                      <  3:154201/142‑7 (MQ=255)

                            cTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGt                                                                                                                         <  5:357617/149‑1 (MQ=255)

                             tGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGATTATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCGAGTGCGTGCCTGTA‑GGCACGCGTGTc                                                                                                                                       <  5:75069/134‑1 (MQ=255)

                             tGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTc                                                                                                                                       >  6:75069/1‑134 (MQ=255)

                             tGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAg                                                                                                                                    >  1:80178/1‑137 (MQ=255)

                             tGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAg                                                                                                                                    <  2:80178/137‑1 (MQ=255)

                                tGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑At                                                                                                                    <  6:347461/149‑1 (MQ=255)

                                  cgcAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGa                                                                                                                                     >  3:192729/1‑131 (MQ=255)

                                  cgcAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGa                                                                                                                                     <  4:192729/131‑1 (MQ=255)

                                         gacACTACTTCGTGCTGCCGGTGGTGCA‑AGCGAATATTGGGGGGTGTTACCCGGAGAGCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCTTGTCGAGCAGTGCCGCGGAC‑ATGCCAAGGt                                                                                                            <  3:209321/146‑1 (MQ=255)

                                          ccACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTATAGCACGCGTGTCGAGCAGTGCGGCGTAC‑ATGCCAAGGt                                                                                                            >  1:123751/1‑148 (MQ=255)

                                           cACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGCGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAg                                                                                                         >  7:331354/1‑149 (MQ=255)

                                            aCGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGt                                                                                                            >  8:187240/1‑145 (MQ=255)

                                            aCGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGt                                                                                                            <  7:187240/145‑1 (MQ=255)

                                            aCGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGt                                                                                                        >  2:114641/1‑149 (MQ=255)

                                            aCGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGt                                                                                                        <  7:283457/149‑1 (MQ=255)

                                                   cGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAc                                                                                                                       >  1:269457/1‑128 (MQ=255)

                                                   cGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAc                                                                                                                       <  2:269457/128‑1 (MQ=255)

                                                    gTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGTACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGc                                                                                                 <  1:121973/148‑1 (MQ=255)

                                                    gTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCt                                                                                                >  4:309130/1‑149 (MQ=255)

                                                    gTGCTGACGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTNCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGTACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGc                                                                                                 <  1:117719/148‑1 (MQ=255)

                                                         gcCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCtt                                                                                           >  6:331515/1‑149 (MQ=255)

                                                          ccGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCtt                                                                                           <  3:213609/148‑1 (MQ=255)

                                                                gTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGtt                                                                                    <  3:309130/149‑1 (MQ=255)

                                                                      cTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGcc                                                                                >  3:14370/1‑148 (MQ=255)

                                                                      cTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ACGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCg                                                                               <  2:273805/149‑1 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAgg                                                                                                             <  5:312892/118‑1 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAgg                                                                                                             >  6:312892/1‑118 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTg                                                                                               <  2:39764/132‑1 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTg                                                                                               >  1:39764/1‑132 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGa                                                                              >  3:254312/1‑149 (MQ=255)

                                                                       tCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGa                                                                              >  1:36494/1‑149 (MQ=255)

                                                                          aaTATTGGGGGTGGTTACCCGGATACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGatat                                                                           <  5:331515/149‑1 (MQ=255)

                                                                            tatTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATgg                                                                         <  5:159603/149‑1 (MQ=255)

                                                                              ttGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATggg                                                                        <  5:102508/148‑1 (MQ=255)

                                                                                gggggTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCg                                                                      <  3:318263/148‑1 (MQ=255)

                                                                                gggggTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCg                                                                      >  4:287033/1‑148 (MQ=255)

                                                                                           cccGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCcgc                                                          >  7:169187/1‑149 (MQ=255)

                                                                                            ccGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCcgcg                                                         >  7:24922/1‑149 (MQ=255)

                                                                                             cGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCcgcgc                                                        <  2:36494/149‑1 (MQ=255)

                                                                                                  aCCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgat                                                   <  8:204623/149‑1 (MQ=255)

                                                                                                    ccTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatga                                                 >  4:254346/1‑149 (MQ=255)

                                                                                                    ccTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatga                                                 >  6:182043/1‑149 (MQ=255)

                                                                                                    ccTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatga                                                 >  7:99094/1‑149 (MQ=255)

                                                                                                    ccTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatga                                                 >  7:101389/1‑149 (MQ=255)

                                                                                                    ccTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGACTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatga                                                 >  1:367544/1‑149 (MQ=255)

                                                                                                           gAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTgg                                            <  8:24922/147‑1 (MQ=255)

                                                                                                           gAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGgga                                          <  3:287033/149‑1 (MQ=255)

                                                                                                            aGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGggag                                         <  8:143073/149‑1 (MQ=255)

                                                                                                                ggTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGc                                     >  1:89828/1‑149 (MQ=255)

                                                                                                                ggTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGACGCGCGTGATGACCTGGGAGGAGc                                     >  7:356355/1‑149 (MQ=255)

                                                                                                                 gtgtTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGcc                                    >  1:151664/1‑149 (MQ=255)

                                                                                                                   gtTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGa                                  >  5:192791/1‑149 (MQ=255)

                                                                                                                      gCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatg                                                  >  8:105979/1‑130 (MQ=255)

                                                                                                                      gCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGtgatg                                                  <  7:105979/130‑1 (MQ=255)

                                                                                                                      gCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGAtt                                <  4:14370/148‑1 (MQ=255)

                                                                                                                       cTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCGTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGc                              >  5:263281/1‑149 (MQ=255)

                                                                                                                            cAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGt                                                      <  8:165423/120‑1 (MQ=255)

                                                                                                                            cAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGt                                                      >  7:165423/1‑120 (MQ=255)

                                                                                                                            cAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTg                         >  8:228900/1‑149 (MQ=255)

                                                                                                                            cAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTg                         >  1:16437/1‑149 (MQ=255)

                                                                                                                            cAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GCCACGCGTCTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATCACCTCGGAGGAGCCGATTGCCGGTg                         >  8:223182/1‑149 (MQ=255)

                                                                                                                             aaGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTgg                        >  3:86707/1‑149 (MQ=255)

                                                                                                                               gCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGggc                      >  8:100449/1‑149 (MQ=255)

                                                                                                                                ccGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGggcg                     >  5:294659/1‑149 (MQ=255)

                                                                                                                                  gCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGACGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGggcggc                   >  1:227446/1‑149 (MQ=255)

                                                                                                                                    aGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGGCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGcggcgg                 <  4:86707/149‑1 (MQ=255)

                                                                                                                                      tCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGa               <  2:89828/149‑1 (MQ=255)

                                                                                                                                       cgacacgcgtgcCTACA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGAc              >  4:59824/7‑149 (MQ=255)

                                                                                                                                        gacacgcgtgcCTACA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGc                                     <  2:164701/120‑1 (MQ=255)

                                                                                                                                        ccAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGAc              >  3:349250/1‑148 (MQ=255)

                                                                                                                                        ccAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGAc              >  6:168355/1‑148 (MQ=255)

                                                                                                                                        ccAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGAc              >  6:64154/1‑148 (MQ=255)

                                                                                                                                         ctgtgcgtgcCTGTA‑GGCTCGCGTGTGGTTCAGTTCCGCGTAG‑ATGCAAATGTGTGTGCCTTGCTGTCTTCGTCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGTCATGGGAGGAGCGGATTGCCGGTGGGCGGCGGGACGa            <  2:367544/147‑1 (MQ=255)

                                                                                                                                         cAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTACGATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGTTGACCTGGGAGGAGCCGATTGCGGGTGGGCGGCgagagc             >  1:70976/1‑147 (MQ=255)

                                                                                                                                         cAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGc                                                                                                 <  7:223504/64‑1 (MQ=255)

                                                                                                                                         cAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGc                                                                                                 >  8:223504/1‑64 (MQ=255)

                                                                                                                                         cAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGggcggc                   <  2:70976/142‑1 (MQ=255)

                                                                                                                                         cAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGa            <  2:123751/149‑1 (MQ=255)

                                                                                                                                            ggcgtgcCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGgc         <  1:2495/148‑1 (MQ=255)

                                                                                                                                                 gcCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGGCGCaa     >  1:225657/1‑148 (MQ=255)

                                                                                                                                                  ccTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATTTGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGGCGCaaaa   <  1:114641/149‑1 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGggagga                                       >  7:334379/1‑112 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGggagga                                       <  8:334379/112‑1 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGAtt                                <  6:248423/119‑1 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGAtt                                >  5:248423/1‑119 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGAtt                                <  2:344471/119‑1 (MQ=255)

                                                                                                                                                   cTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGAtt                                >  1:344471/1‑119 (MQ=255)

                                                                                                                                                     gTA‑GGCCCGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGAAATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGGCGCAAAAg  >  1:114503/1‑147 (MQ=255)

CGAGGACGAGCGGCGGCATAACTTCCCGCTGGTGCGCAGTGGCCACGACATCGTGCTGCCGGGCGTGCA‑CTCGAATATTGGGGGTGGTTACCCGGAGACCCTTCTGGAGCAGGTGTTGCTGTGCAAGCCGCAGTCCCAGTGCGTGCCTGTA‑GGCACGCGTGTCGAGCAGTGCCGCGTAC‑ATGCCAAGGTGAGTGCCTTGCTGGCTTCGGCGTTTGCCGATATGGGCGAACCCAGGCCGCGCGTGATGACCTGGGAGGAGCCGATTGCCGGTGGGCGGCGGGACGAGGCGCAAAAG  >  NC_002947/2310900‑2311194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`