| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 10.1% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 10.1% | 605.1 / 42.5 | 228 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (99/106); new base T (10/13); total (109/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.00e-01 | |||||||||||
Only 100 of 235 total aligned reads displayed.
CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196912‑197180 | cGCCGGTGACAGTGACCCTGTCCAAGGGCCAAACCATTACCTTTTAAGCCGGCAAGACCGAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCgg < 7:159678/148‑1 (MQ=255) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTCCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCCCAGGCGGt > 8:277194/1‑148 (MQ=17) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTc < 5:10478/149‑1 (MQ=35) gACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGt < 7:268908/142‑1 (MQ=32) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGa < 7:7180/149‑1 (MQ=34) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGa < 7:185581/149‑1 (MQ=34) taGTTACCCTGTCCAACGGCCAATCCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCTTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAg < 4:45284/148‑1 (MQ=255) cAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAg < 1:157170/149‑1 (MQ=33) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAg > 1:332033/1‑148 (MQ=32) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCCAATGACGACTACAACAAAGGTTCGAACGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTagag > 4:349354/1‑148 (MQ=11) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCaa < 2:313510/149‑1 (MQ=32) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACt < 7:12074/149‑1 (MQ=32) tGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGGCCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCg > 8:324808/1‑129 (MQ=17) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 6:308960/1‑148 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa < 4:28423/149‑1 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGa < 1:324374/134‑1 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGa > 2:324374/1‑134 (MQ=32) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 7:59392/149‑1 (MQ=32) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt > 4:197867/1‑149 (MQ=32) cGGCCAAACCATTACCGTTGAAGCGGGCAAGACCCAGGGC‑AGCGTAGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCTTCGAGAT‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 5:67635/149‑1 (MQ=255) cGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATc < 3:207832/149‑1 (MQ=33) ggCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGAccc > 8:258015/1‑142 (MQ=32) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAAGCGTCGATTTCCACACCCCGGCGAATGACGTCTACAACAACGGTACGCCCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGAAATTACGAGCAACTGCCCCCGAAACCgc > 1:66670/1‑148 (MQ=11) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 3:86344/1‑149 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGAAAGTTCGAGCAACTGACCCCGAAACCGAcc > 3:280293/1‑149 (MQ=12) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 6:216019/147‑1 (MQ=34) aaCCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 5:216019/1‑147 (MQ=34) aCCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc > 5:167061/1‑149 (MQ=37) cATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 2:209400/1‑149 (MQ=37) aTTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTc < 2:76672/120‑1 (MQ=32) aTTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTc > 1:76672/1‑120 (MQ=32) aTTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 3:97381/1‑148 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 7:129905/1‑149 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 4:313573/149‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 4:180816/1‑146 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa < 2:149548/148‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg < 3:47364/149‑1 (MQ=37) ccGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATATCCAGACACCCGCGAATGACGTCTACAACAACGGTTCGACCCTCAGCGTCACCATCGACAA‑CGCCACAGGCGGTAATTTAGAGCAACTGACCCCGAAACCGa > 6:84871/1‑138 (MQ=11) cGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 6:289335/149‑1 (MQ=37) gtccccgCCGGCAAGACCCACGCC‑AGCGGCGATTTCCAGACCCCGCCGAATGACGTCTACCACAACGGGTCGCCCGGCAGCGCCACCATCGAGAA‑CGCCACAGGCGGAAATTTCGAGCAACTGACCCCGAACCCGACCCCGCCTCAGAc < 2:230288/143‑1 (MQ=11) gAAGCCGGCAAGACCCAGGGC‑AGCGGCGATTTCCAGACCACGGCGAATGACGTCTAAAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa < 5:119155/148‑1 (MQ=255) aaGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 6:206616/1‑148 (MQ=37) aGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcccc < 8:37158/135‑1 (MQ=37) gCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 4:164875/149‑1 (MQ=37) ccGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATc < 5:308960/149‑1 (MQ=37) cGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCa < 7:291186/149‑1 (MQ=37) ggCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa > 1:226302/1‑149 (MQ=37) gCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 6:144885/149‑1 (MQ=37) cAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACg > 4:126517/1‑149 (MQ=37) aaGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa < 4:334959/149‑1 (MQ=37) aaGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa > 3:255394/1‑149 (MQ=37) aGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 6:245355/139‑1 (MQ=37) aGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 5:245355/1‑139 (MQ=37) aCCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc < 1:349026/149‑1 (MQ=34) cccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg > 3:61743/1‑149 (MQ=34) cccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGACACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 6:348292/120‑1 (MQ=25) ccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCTTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 3:332815/142‑1 (MQ=21) ccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa > 8:314958/1‑141 (MQ=34) ccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 7:314958/141‑1 (MQ=34) ccAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg < 5:91369/149‑1 (MQ=34) cAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:104637/1‑149 (MQ=34) cAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 7:55741/149‑1 (MQ=34) aGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 8:332349/119‑1 (MQ=35) atgtcatcGTCTATTTACATACCCCGGCGAATTACCGCTACAACAACGGTTCGACCGTCAGCGTCACGATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 7:78373/142‑1 (MQ=11) aGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGACTCAGACCACGATCAACGACTCGGTCGATGc < 3:169702/149‑1 (MQ=37) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc < 3:126517/149‑1 (MQ=38) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac < 4:89325/149‑1 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac > 3:196926/1‑149 (MQ=39) acttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCaccacc > 8:186107/3‑149 (MQ=19) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACCGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 1:49744/97‑1 (MQ=16) tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 8:59321/105‑1 (MQ=35) ttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCgg > 7:228961/1‑133 (MQ=34) cAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCa > 2:61265/1‑110 (MQ=35) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 8:112516/149‑1 (MQ=21) aGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCATCTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 6:166278/149‑1 (MQ=255) gACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 7:3613/1‑149 (MQ=39) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAATGACTCGGTCGATGCCACCACCGCGACCCTGa < 8:134780/149‑1 (MQ=255) ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt > 5:277432/1‑129 (MQ=35) cGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 5:199965/1‑149 (MQ=39) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg > 2:270118/1‑149 (MQ=37) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg < 4:176972/149‑1 (MQ=37) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAg < 1:270118/148‑1 (MQ=37) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGcc > 4:109599/1‑149 (MQ=37) tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 5:374219/1‑149 (MQ=37) tACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc > 2:183045/1‑129 (MQ=25) tACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 1:183045/129‑1 (MQ=25) acaacaACGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 3:179255/128‑1 (MQ=25) acaacaACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGa < 7:332100/58‑1 (MQ=35) caacaaCGGTTCGACTCTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCAAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa < 4:229732/149‑1 (MQ=255) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 3:270213/1‑149 (MQ=37) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa > 2:68466/1‑149 (MQ=37) acGGTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 2:116701/1‑147 (MQ=21) acGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 8:231153/1‑147 (MQ=37) acGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 6:374802/149‑1 (MQ=37) ggTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCCCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 6:177328/1‑149 (MQ=255) ggTTCGACTGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACACGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgc > 1:23708/1‑148 (MQ=255) gACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 3:203730/148‑1 (MQ=37) acGTCAGCGTTACCATCGAGAA‑CTCCACAGGCTGTAATTTCGAGCAAATGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGTCTGCGtg < 6:113557/148‑2 (MQ=11) cGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa > 6:52568/1‑149 (MQ=38) cGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 5:357133/149‑1 (MQ=38) | CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGC‑AGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAA‑CGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAA > NC_002947/196912‑197180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |