| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,440,146 | T→G | 5.1% | L296R (CTC→CGC) | pcaF‑II → | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,440,146 | 0 | T | G | 5.1% | 384.6 / 8.7 | 117 | L296R (CTC→CGC) | pcaF‑II | beta‑ketoadipyl‑CoA thiolase subunit beta |
| Reads supporting (aligned to +/- strand): ref base T (54/57); new base G (4/2); total (58/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.75e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
GACGGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTT > NC_002947/2439998‑2440293 | gACGGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTTGCCGGTGTCGACCCGGCATTCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑Ct < 8:64495/149‑1 (MQ=255)gACGGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑Ct < 5:112485/149‑1 (MQ=255)gACGGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑Ct < 7:330654/149‑1 (MQ=255) gcgcCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAg < 1:366248/149‑1 (MQ=255) gcCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCg > 1:364826/1‑149 (MQ=255) gTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGc < 6:221639/147‑1 (MQ=255) gTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCgg > 6:377030/1‑149 (MQ=255) gTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCgg > 1:148756/1‑149 (MQ=255) gCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGc > 4:83796/1‑149 (MQ=255) gATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTg < 2:364826/148‑1 (MQ=255) aTCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGAc < 3:166687/149‑1 (MQ=255) aTCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CGCACGCTTGAGGGCtttct < 5:118383/149‑4 (MQ=255) tCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCTGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCCCGCACGCTTGag < 8:5984/148‑2 (MQ=255) tCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGAcc > 5:312444/1‑149 (MQ=255) tCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATg > 2:247193/1‑149 (MQ=255) aTGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGc < 4:172105/149‑1 (MQ=255) tCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACTGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCg < 1:95878/148‑1 (MQ=255) tCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCg < 8:64035/148‑1 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATTGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGata < 1:77064/149‑1 (MQ=255) cGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGata < 1:171196/149‑1 (MQ=255) ggTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGatat > 5:141983/1‑149 (MQ=255) ggTCAGCGTGCCATGGACCTCGGTATCAAGCCATTCGCGGTGATCAGTTCGATGCCAGTGGCCGGTGTCGCCCCGGCAATCATGGGCTACGGCCCGGTGCCAACCACCCAGAAAGCC‑CTCAAGCGTGCAGGCTAGACCATGGcccaaa > 6:226225/1‑144 (MQ=255) gTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATc < 6:173888/149‑1 (MQ=255) aGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGAc < 4:352318/149‑1 (MQ=255) gCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGc < 6:86187/127‑1 (MQ=255) gCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGc > 5:86187/1‑127 (MQ=255) ccATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc < 1:284792/149‑1 (MQ=255) ccATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc < 5:181528/149‑1 (MQ=255) cATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 3:15753/1‑148 (MQ=255) aTGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 6:15232/1‑147 (MQ=255) tGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAg > 5:1867/1‑149 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGCCCATGGCCGATATCGACTTCATCGAGCTCat > 6:272468/1‑148 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc > 5:378121/1‑141 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATc < 6:378121/141‑1 (MQ=255) cTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCaa > 7:28672/1‑149 (MQ=255) tCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAAc > 2:243029/1‑149 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGAc > 8:342815/1‑132 (MQ=255) ggTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGAc < 7:342815/132‑1 (MQ=255) gTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGaa < 6:342252/149‑1 (MQ=255) tATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAg < 1:243029/149‑1 (MQ=255) tATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATAGACCCAGAAAGCCACTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGaa < 1:96102/149‑1 (MQ=255) ccAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCt > 4:71431/1‑149 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTc > 8:78419/1‑149 (MQ=255) aGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTc > 4:264510/1‑149 (MQ=255) gCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCg < 3:135026/149‑1 (MQ=255) ccATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGc > 8:191613/1‑149 (MQ=255) cATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCCGGCTTGACCATGGCCGATATCGACTTAATCGAGCTCAACGAAGccgt > 2:79920/1‑143 (MQ=255) aTTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTg > 4:356293/1‑149 (MQ=255) gCGGTGATCCGTTCGATGTCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCTACCCAGAAAGCC‑GTCATGCGTGCGGGCTTGACCATGGCCTATATCGACTTAATCGAGCTCAACGAAGCCTTAGCTgcgc < 5:226225/148‑1 (MQ=255) cGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAg < 8:28672/149‑1 (MQ=255) ggTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAgg > 6:229798/1‑149 (MQ=255) tCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAgg > 5:4374/1‑144 (MQ=255) tCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAgg < 6:4374/144‑1 (MQ=255) cGTTCGATGGCAGTGGGCTGTGTCGACGCGGCAATCATGGGCTACGGCCCGGTGCGATCGACCCAGAAAGCC‑CTGAAGCGTGGGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCTCCGAAGGCTTCGCTGCGCAGGCCCTGc < 6:119843/148‑1 (MQ=255) cGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTg > 7:333585/1‑149 (MQ=255) cAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGaaa < 4:15753/149‑1 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGa < 7:78419/149‑1 (MQ=255) gTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGa > 4:79353/1‑149 (MQ=255) gCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACtt < 5:323325/149‑1 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGATTTGa < 8:161664/149‑1 (MQ=255) cGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGa < 5:229798/149‑1 (MQ=255) aCCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTc > 5:356370/1‑149 (MQ=255) cccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGATCTCAACGAAGcc < 5:210645/103‑1 (MQ=255) cccGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCg < 6:356370/149‑1 (MQ=255) cGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGAc < 8:333585/149‑1 (MQ=255) ggCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGAc > 5:145101/1‑148 (MQ=255) cAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAg < 3:79353/149‑1 (MQ=255) cAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAg < 5:301112/149‑1 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg > 4:109172/1‑149 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg < 6:312444/149‑1 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg > 1:206897/1‑149 (MQ=255) tCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatg > 8:322211/1‑149 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgga < 6:141983/149‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgg < 5:5866/148‑1 (MQ=255) aTGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatgg < 5:377030/148‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:71431/149‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 3:264510/149‑1 (MQ=255) tGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAgatggat < 6:145101/149‑1 (MQ=255) gggCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGat < 6:41664/64‑1 (MQ=255) gggCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGat > 5:41664/1‑64 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATgaga < 2:206897/149‑1 (MQ=255) cTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATgaga < 7:322211/149‑1 (MQ=255) tACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATgag > 2:16413/1‑147 (MQ=255) ggCCCGGTGCCATCGACCCAGGAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGt < 7:97219/149‑1 (MQ=255) gCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGtt < 7:191613/149‑1 (MQ=255) ccGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTaa > 6:182510/1‑149 (MQ=255) cGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAAc < 1:16413/149‑1 (MQ=255) cGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAAc < 6:1867/149‑1 (MQ=255) tggtcaaGCC‑CGCACGCTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGgcggcg > 1:336428/6‑149 (MQ=255) ccAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGgcggcg > 2:129471/1‑149 (MQ=255) tcaaGCC‑CGCACGCTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCa > 3:317129/3‑149 (MQ=255) tcaaGCC‑CGCACGCTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCa > 8:77196/3‑149 (MQ=255) gAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCa > 6:320454/1‑149 (MQ=255) aaaGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCAt > 7:242897/1‑149 (MQ=255) gCC‑CGCACGCTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAc > 5:328588/1‑135 (MQ=255) gCC‑CGCACGCTTGAGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCAc < 6:328588/135‑1 (MQ=255) c‑cTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGTGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCtt > 6:59178/1‑149 (MQ=255) c‑cTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCtt > 4:26476/1‑149 (MQ=255) c‑cTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCtt < 3:109172/149‑1 (MQ=255) tCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACggcggc < 6:238436/137‑1 (MQ=255) | GACGGCGCCTCGTGCATGATCGTCATGTCCGGTCAGCGTGCCATGGACCTCGGTATCCAGCCATTGGCGGTGATCCGTTCGATGGCAGTGGCCGGTGTCGACCCGGCAATCATGGGCTACGGCCCGGTGCCATCGACCCAGAAAGCC‑CTCAAGCGTGCGGGCTTGACCATGGCCGATATCGACTTCATCGAGCTCAACGAAGCCTTCGCTGCGCAGGCCCTGCCCGTGCTGAAAGACTTGAAAGTGCTCGACAAGATGGATGAGAAGGTTAACCTGCACGGCGGCGCCATTGCTTT > NC_002947/2439998‑2440293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |