Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,571,108 | C→G | 12.2% | intergenic (‑26/+18) | PP_2254 ← / ← dctA‑III | GntR family transcriptional regulator/C4‑dicarboxylate transport protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,571,108 | 0 | C | G | 12.2% | 105.3 / 8.0 | 41 | intergenic (‑26/+18) | PP_2254/dctA‑III | GntR family transcriptional regulator/C4‑dicarboxylate transport protein |
Reads supporting (aligned to +/- strand): ref base C (20/16); new base G (2/3); total (22/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.49e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 |
CAGTTGTTCGGCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTG > NC_002947/2570963‑2571252 | cAGTTGTTCGGCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATg < 3:252329/149‑1 (MQ=255) cGGCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCATGACGCCGGccct > 7:325833/1‑147 (MQ=255) ggCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCATGACGCCGGccctt < 8:325833/149‑4 (MQ=255) ggCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGATGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACg > 4:272608/1‑149 (MQ=255) ccAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGtt < 5:167467/149‑1 (MQ=255) aGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCATGACGCCGGcccttccag < 2:108087/149‑8 (MQ=255) gCCGGGGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTg < 2:119491/149‑1 (MQ=255) cGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCATGACGCCg > 5:2320/1‑111 (MQ=255) cGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCATGACGCCg < 6:2320/111‑1 (MQ=255) cgcCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGttgct < 7:83277/149‑1 (MQ=255) cATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGACGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGttgcttgc > 7:355953/1‑149 (MQ=255) cATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGttgcttgc < 8:355953/149‑1 (MQ=255) ccGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTgcgtggcg > 8:156979/1‑149 (MQ=255) ccGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTgcgt < 5:346691/145‑1 (MQ=255) ccGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTgcgt > 6:346691/1‑145 (MQ=255) gCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTggggg > 2:353344/1‑149 (MQ=255) gCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTgggg > 2:19449/1‑148 (MQ=255) gCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTgggg < 1:19449/148‑1 (MQ=255) ccAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTggggg > 3:305121/1‑148 (MQ=255) gggCGTGGCGGAGTTTTTCCCCCACTGAGTTGACGCCGGTTGATGCGCTGCTCTCGGTTCGCTCCTTGTAGGGCCGGCGTCATGCGGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCaaa < 2:100132/149‑1 (MQ=255) tGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGTAAAGCCAg > 5:368636/1‑149 (MQ=255) ggCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAgg < 1:353344/149‑1 (MQ=255) caccaaTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAg > 7:237550/1‑148 (MQ=255) cacTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCt > 8:192924/1‑100 (MQ=255) cTGAGTTGACGACGTTTGATGAGCTGATCACGGTGCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTTCGTGGCGTGTGGGCAAAGCCAGGCTTGCCGTCGAGCACGtt < 2:108336/149‑1 (MQ=255) gTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTgc > 8:74927/1‑149 (MQ=255) ttGACTAGGGTTGTTGAGGTGTTCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTgcg < 4:305121/149‑1 (MQ=255) gatgaGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAgg < 6:368636/148‑1 (MQ=255) atgaGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGt > 6:39556/1‑148 (MQ=255) cTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATg > 4:226024/1‑148 (MQ=255) aTCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTcc < 8:237550/148‑1 (MQ=255) tCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCtt < 3:150290/149‑1 (MQ=255) cACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTtc > 5:170941/1‑149 (MQ=255) aCGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTtct < 3:272608/149‑1 (MQ=255) ccTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACggg > 3:329833/1‑148 (MQ=255) tGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCaa > 5:252194/1‑149 (MQ=255) gAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATg > 3:238238/1‑149 (MQ=255) gAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATg > 6:2231/1‑149 (MQ=255) ggCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCa > 3:215801/1‑149 (MQ=255) gCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCAc < 6:252194/149‑1 (MQ=255) gCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTg > 6:258250/1‑149 (MQ=255) | CAGTTGTTCGGCCAGTTCGCGCTGGCCTGGCAGCATGTCGCCGGTGCGCCATTGGCCGCGGGCCAGGGCCTGGCGGAGTTTTTCCACCACTGAGTTGACGACGGTTGATGAGCTGATCACGGTTCGCTCCTGGAAGGGCCGGCGTCATGCCGGCCACGTTCGCTCAGAATTCCTGTTGATGGGCGCTGGGTTGCTTGCGTGGCGTGGGGGCAAAGCCAGGCTTGCCGTCGAGCACGTTCTGCGCACGTTCCAGGTCAATGTCCTTCTCCCAACGGGCAATGGCCACGGTG > NC_002947/2570963‑2571252 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |