Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,742,917 | C→T | 10.0% | H5Y (CAC→TAC) ‡ | PP_2397 → | EF hand domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,742,917 | 0 | C | T | 10.0% | 167.6 / 7.2 | 60 | H5Y (CAC→TAC) ‡ | PP_2397 | EF hand domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (29/25); new base T (3/3); total (32/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-01 |
CCTGCCAGCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGA > NC_002947/2742770‑2743061 | cctgccAGCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCa > 4:232198/1‑149 (MQ=255) ccAGCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCtt > 6:156302/1‑149 (MQ=255) aGCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCGGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTgg > 1:143177/1‑149 (MQ=255) gCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTggg > 7:275236/1‑149 (MQ=255) cGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCtt < 8:331133/145‑1 (MQ=255) cGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCtt > 7:331133/1‑145 (MQ=255) gAAAAGGCGGTGGCGGTACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGTGCCTTgggg > 3:100163/1‑148 (MQ=255) gAAAAGGCGGTGGCGGTACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGTGCCTTgggg < 4:100163/148‑1 (MQ=255) gAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGTGCCTTGGGGc < 4:81865/149‑1 (MQ=255) gAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGc < 3:232198/149‑1 (MQ=255) aaaaGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGcc > 8:138072/1‑149 (MQ=255) cGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGc < 8:225326/149‑1 (MQ=255) tGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGGCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCgg < 3:67680/149‑1 (MQ=255) cACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGgtggtg < 5:156302/149‑1 (MQ=255) aCCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgt < 8:275236/149‑1 (MQ=255) gcggcgGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAACCCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTa > 7:259551/1‑149 (MQ=255) ggcggcCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATc > 7:312385/1‑149 (MQ=255) ggcCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGc > 5:300261/1‑149 (MQ=255) ggcCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGc > 3:173645/1‑149 (MQ=255) cGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCtgtg > 8:114024/1‑149 (MQ=255) cGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCtgtg < 4:173645/149‑1 (MQ=255) cAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGtgct < 8:259551/149‑1 (MQ=255) gCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCa < 2:180916/149‑1 (MQ=255) gCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCa < 4:57349/149‑1 (MQ=255) aaGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGAc < 4:257172/149‑1 (MQ=255) aaaaGGACAGCAAGCCGGCCAAGCCCGCGAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGc > 1:211303/1‑132 (MQ=255) aaaaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggt > 8:225212/1‑109 (MQ=255) aaaaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggt < 7:225212/109‑1 (MQ=255) aaaaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGc < 2:211303/132‑1 (MQ=255) aaaaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGACCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgt > 3:310677/1‑114 (MQ=255) aaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggtgg > 1:252920/1‑109 (MQ=255) aaGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGggtgg < 2:252920/109‑1 (MQ=255) ggACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTCCCGGGTGGTGTGTATCGCACCGTATCTGCCTGTGATGCAGACCTACTGc > 4:101101/1‑148 (MQ=255) gACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAACCCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGcc > 6:168281/1‑148 (MQ=255) aGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgt > 5:94941/1‑106 (MQ=255) aGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGgtgt < 6:94941/106‑1 (MQ=255) aGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATa > 5:327576/1‑148 (MQ=255) cAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACa > 4:84714/1‑148 (MQ=255) cccGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGc < 6:300261/149‑1 (MQ=255) ccGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCa < 7:138072/149‑1 (MQ=255) cGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCAc > 4:371135/1‑149 (MQ=255) cGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCAc > 3:334763/1‑149 (MQ=255) gCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCAc > 3:317109/1‑148 (MQ=255) ccccGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCACCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACCGTATCTGCCTGTTCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGAc < 3:101101/149‑1 (MQ=255) gCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAAc < 3:84714/149‑1 (MQ=255) gCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGc < 6:327576/149‑1 (MQ=255) tGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGcc > 4:82916/1‑148 (MQ=255) gAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTaa > 4:367008/1‑149 (MQ=255) tGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTc > 3:124140/1‑149 (MQ=255) cGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTGGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACttt < 4:317109/149‑1 (MQ=255) ccTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCa < 5:13749/143‑1 (MQ=255) ccTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCa > 6:13749/1‑143 (MQ=255) ggCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTTGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACa < 5:331625/113‑1 (MQ=255) ggCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACa > 6:331625/1‑113 (MQ=255) ggCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAccc > 8:293391/1‑148 (MQ=255) gCCCCAAGGTGCCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGACTGGCACGATACATACCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAAacc > 7:265242/1‑147 (MQ=255) cccAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGt < 4:334763/149‑1 (MQ=255) ccAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCaa < 2:33615/141‑1 (MQ=255) ccAAGGCACCTTGGGGCCCGTTGCCGGGTGCTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCaa > 1:33615/1‑141 (MQ=255) aaGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGa < 3:82916/149‑1 (MQ=255) | CCTGCCAGCGAAAAGGCGGTGGCGGCACCCGAGCCCGTAGCGGCGGCCCCGCAAGCCAAGGAAAAGGACAGCAAGCCGGCCAAGCCCGCCAAGCCAGCGGCCCCGCCCAAACCGCTGGAAGACTGATCACGCCTCATGGCCCCAAGGCACCTTGGGGCCCGTTGCCGGGTGGTGTGTATCGCACTGTATCTGCCTGTGCTGCAGACCTACTGCCATACAAAAGCGCGCCTGGCACGATACATCCCCGACAAACCGCAACGGCCTAATGGCTCCACTTTCCAACCCCAGTGGA > NC_002947/2742770‑2743061 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |