Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,947,556 | T→C | 7.1% | intergenic (‑35/‑177) | yijP ← / → PP_2580 | phosphoethanolamine transferase CptA/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,947,556 | 0 | T | C | 7.1% | 159.8 / 2.7 | 56 | intergenic (‑35/‑177) | yijP/PP_2580 | phosphoethanolamine transferase CptA/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (26/26); new base C (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.29e-01 |
AGCAGCAGCGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCGGGGTATGATGGCGGCAG > NC_002947/2947412‑2947704 | agcagcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGGCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTgcgc > 1:106673/1‑149 (MQ=255) agcagcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTgcgc < 6:304904/149‑1 (MQ=255) cagcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGt < 8:43752/149‑1 (MQ=255) gcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTgg > 8:66467/1‑149 (MQ=255) gcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTgg < 7:103083/149‑1 (MQ=255) gcagcGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTgg < 8:141272/149‑1 (MQ=255) gTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGc < 2:106673/149‑1 (MQ=255) ccGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGC‑GGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGc < 5:34899/149‑1 (MQ=255) cGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGc > 5:113757/1‑149 (MQ=255) ggAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGc > 5:188979/1‑148 (MQ=255) gagaAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTa < 6:113757/149‑1 (MQ=255) aaaTACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATc > 3:145221/1‑149 (MQ=255) aTACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTg < 6:188979/149‑1 (MQ=255) tACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGc < 4:145221/149‑1 (MQ=255) ccAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCgg > 8:197686/1‑149 (MQ=255) aGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGCGCGCGTGGCCGGAAAgg < 7:336722/120‑1 (MQ=255) aGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGCGCGCGTGGCCGGAAAgg > 4:71189/1‑120 (MQ=255) aGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGCGCGCGTGGCCGGAAAgg < 3:71189/120‑1 (MQ=255) aGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGCGCGCGTGGCCGGAAAgg > 8:336722/1‑120 (MQ=255) gagCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCtgtg < 4:12705/140‑1 (MQ=255) gagCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCtgtg > 3:12705/1‑140 (MQ=255) agccGAGGCCGGCCCAGTCCACGGGCTTGTGCGCGGCGGGGGATGTTGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAAc < 4:50623/149‑1 (MQ=255) agccGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGc < 4:291326/127‑1 (MQ=255) agccGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGc > 3:291326/1‑127 (MQ=255) gccGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAAcg > 4:171401/1‑149 (MQ=255) cGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGc < 7:43442/124‑1 (MQ=255) cGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGc > 8:43442/1‑124 (MQ=255) aGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGtt < 3:318582/149‑1 (MQ=255) aGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGtt < 2:183478/149‑1 (MQ=255) cACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGtt < 2:327851/135‑1 (MQ=255) cACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGtt > 1:327851/1‑135 (MQ=255) tgCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGt < 7:197686/149‑1 (MQ=255) ggcggGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAg < 3:171401/149‑1 (MQ=255) gATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCCGCATgg < 4:9262/133‑1 (MQ=255) gATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCCGCATgg > 3:9262/1‑133 (MQ=255) tAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTg < 5:205072/148‑1 (MQ=255) gtgtgtGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGc > 3:222103/1‑149 (MQ=255) tgACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGtt < 7:66467/148‑1 (MQ=255) acacGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCAt > 6:137258/1‑149 (MQ=255) cacGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGAGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATc > 5:367113/1‑149 (MQ=255) ccGTATGCCTCGACGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCGAATCAGCGGGCTTTGAAAATAACCTCCACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATcg > 8:257443/2‑149 (MQ=255) ccTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTc < 6:367113/149‑1 (MQ=255) cTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCa < 5:89736/122‑1 (MQ=255) cTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCa > 6:89736/1‑122 (MQ=255) cTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTcc > 7:32234/1‑149 (MQ=255) gtACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTcgc > 5:237363/1‑149 (MQ=255) tACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATc > 7:193470/1‑133 (MQ=255) tACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATc < 8:193470/133‑1 (MQ=255) ccTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTcgccgc > 3:140652/1‑149 (MQ=255) ttGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGccgccg > 6:151373/1‑149 (MQ=255) ttGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGccgccg > 5:97873/1‑149 (MQ=255) ttGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGccgccg > 3:26437/1‑149 (MQ=255) ttGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGccgccg > 1:228449/1‑149 (MQ=255) tGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCgg > 3:124994/1‑149 (MQ=255) cggcCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGTCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCGGGGt < 6:97873/149‑1 (MQ=255) gcCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCGGGGTat < 4:124994/149‑1 (MQ=255) tgCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCGGGGTATGATGGCGGCAg < 8:32234/149‑1 (MQ=255) | AGCAGCAGCGCCTGGGTTACACCGGAGAAATACCAGAAGAACAGCAAGAGCCAGCCGAGGCCGGCCCAGTCCACGCGCTTGTGCGCGGCGGGGGATGTAGTGTGTGACACGTATGCCTCGTCGTACCTTGGCGGCCAGCGGTTGTGCGCGTGGCCGGAAAGGGCGTGACGCTAATCTGCGGGCTGTGAAAATAACGTCAACGCGTTGAATCCTGTGACCTGCATGGCCGTAGCAGGCATACGCTGGGCCGTTCATCGCGTTTTCCCCTCGCCGCCGGGGTATGATGGCGGCAG > NC_002947/2947412‑2947704 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |