Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,177,427 C→A 15.8% K112N (AAG→AAT) ‡ PP_2788 ← MerR family transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,177,4270CA15.8% 110.1 / 10.2 43K112N (AAG→AAT) ‡PP_2788MerR family transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (17/19);  new base A (4/3);  total (21/22)
Fisher's exact test for biased strand distribution p-value = 6.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCT  >  NC_002947/3177280‑3177575
                                                                                                                                                   |                                                                                                                                                     
cagcGGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGTAGCGGATTCAGCGGGC‑TTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCtt                                                                                                                                                     <  6:156762/149‑1 (MQ=255)
    cGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAg                                                                                                                                                  <  2:262114/149‑1 (MQ=255)
        gggTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGgctc                                                                                                                                              <  4:49345/149‑1 (MQ=255)
                 tgtgCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGa                                                                                                                                                   >  6:309035/1‑135 (MQ=255)
                 tgtgCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGa                                                                                                                                                   <  5:309035/135‑1 (MQ=255)
                  gtgCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcagat                                                                                                                                          <  6:114709/143‑3 (MQ=255)
                  gtgCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcagat                                                                                                                                          >  5:114709/1‑141 (MQ=255)
                    gCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTc                                                                                                                                   >  1:103732/1‑148 (MQ=255)
                      cAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAAATGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAAc                                                                                                                                >  8:235039/1‑149 (MQ=255)
                           tAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcaga                                                                                                                                           >  1:58410/1‑132 (MQ=255)
                           tAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcaga                                                                                                                                           <  2:58410/133‑2 (MQ=255)
                           tAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGc                                                                                                                           >  8:146884/1‑149 (MQ=255)
                              aTCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcagatgc                                                                                                                                        >  3:226476/1‑129 (MQ=255)
                              aTCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCCTCAAGGATgctcagatgc                                                                                                                                        <  4:226476/133‑5 (MQ=255)
                               tCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGt                                                                                                                        >  4:154785/1‑148 (MQ=255)
                                    ggggCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCa                                                                                                                  >  5:345300/1‑149 (MQ=255)
                                              cGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGcc                                                                                                                          <  3:310865/131‑1 (MQ=255)
                                              cGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGcc                                                                                                                          >  4:310865/1‑131 (MQ=255)
                                                  cTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGcc                                                                                                    >  4:262035/1‑149 (MQ=255)
                                                   tGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCTTCATTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGcat                                                                                                   >  6:279443/1‑147 (MQ=255)
                                                     aaaaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTgg                                                                                                 <  4:342325/149‑1 (MQ=255)
                                                     aaaaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTgg                                                                                                 <  8:349299/149‑1 (MQ=255)
                                                     aaaaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTg                                                                                                  >  5:323575/1‑148 (MQ=255)
                                                       aaCGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCCGGCTTTTTCCAGGTCTTCGAACTGGCATTGCATCTGCGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCAAGCACTTGCTGCAAGGCCTGGAt                                                                                               >  5:257893/1‑149 (MQ=255)
                                                             aCCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGccc                                                                                         <  2:195996/149‑1 (MQ=255)
                                                              ccGGGCGCCATGGCCGTTCAGGGGCGGCGGTGCGGTTTCAGCGGGCTTTTTCCAGGGGTTAGAACTGGCATTGCATCTTATCATCCTTTAGGCTCAGCTCAAACTCAACCAATCCGTCATGCACTTGCTGCAAGGCCTGGATCTGcccc                                                                                        <  7:235039/149‑1 (MQ=255)
                                                                        tgtccGTTCAGGGGCGGCGGAGCTGATTCAGCTGGCTTTTTCCAGGTTTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGGCCCATCAATTCCt                                                                              <  3:59640/146‑1 (MQ=255)
                                                                                       ggcggAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGa                                                              <  7:146884/149‑1 (MQ=255)
                                                                                                gaTTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCa                                                     >  7:340935/1‑149 (MQ=255)
                                                                                                 aTTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCAt                                                    >  8:111688/1‑149 (MQ=255)
                                                                                                      gCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCTAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCa                                               <  5:83160/149‑1 (MQ=255)
                                                                                                       gggggTTTTTCCATGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTGAACCAAGCCGTCATGGACTTGGTGCTAGGCCTGGATCTGCCCGATAAATTCCTGACTTTTTGTTATCGATGGCCTGCATGGCCa                                               <  1:27591/148‑1 (MQ=255)
                                                                                                                 ccAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATTCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAggg                                     <  6:323575/148‑1 (MQ=255)
                                                                                                                                 gCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGcc                                                         >  1:26782/1‑112 (MQ=255)
                                                                                                                                 gCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGcc                                                         <  2:26782/112‑1 (MQ=255)
                                                                                                                                 gCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCga                     <  3:154785/148‑1 (MQ=255)
                                                                                                                                   aTTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCgatga                  <  2:103732/149‑1 (MQ=255)
                                                                                                                                    ttGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCgatgat                 >  7:102686/1‑149 (MQ=255)
                                                                                                                                       cATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATcc               <  6:345300/148‑1 (MQ=255)
                                                                                                                                            gAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAg          >  8:24889/1‑148 (MQ=255)
                                                                                                                                             aGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCa           <  8:102686/146‑1 (MQ=255)
                                                                                                                                               cATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATg      >  5:278444/1‑149 (MQ=255)
                                                                                                                                               cATCCTTGAGCCTAAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGCCAGCTCCTGCCCGCGATGATACTGCAGAATg      >  2:254031/1‑149 (MQ=255)
                                                                                                                                                   cTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCt  >  4:340230/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                     
CAGCCGGGGGGTGGGGCTGTGCCAGGCTAAATCGCCGGGGCGCCTGCGTGCTGAAAACGGCACCGGGCGCCATGGCCGTTCAGGGGCGGCGGAGCGGATTCAGCGGGCTTTTTCCAGGTGTTCGAACTGGCATTGCATCTGAGCATCCTTGAGGCTCAGCTCAAACTCAACCAAGCCGTCATGCACTTGCTGCAAGGCCTGGATCTGCCCCATCAATTCCTG‑CTTTTTGTTATCGATGGCCTGCATGGCCAGATCCCAGGGCAGCTCCTGGCCGCGATGATCCTGCAGAATGGCCT  >  NC_002947/3177280‑3177575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑