Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,630,322 | T→C | 12.5% | W315R (TGG→CGG) ‡ | PP_3200 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,630,322 | 0 | T | C | 12.5% | 99.0 / 6.2 | 40 | W315R (TGG→CGG) ‡ | PP_3200 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (20/15); new base C (3/2); total (23/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
TATTTCTCCACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTCTACTGGGTGTATCCCGAGGGTATC > NC_002947/3630175‑3630468 | tATTTCTCCACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTg > 8:281921/1‑149 (MQ=255) aTTTCTCCACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTgg > 1:193990/1‑149 (MQ=255) tcCACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCAc > 6:116615/1‑149 (MQ=255) ccACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCAcc > 7:181525/1‑149 (MQ=255) gacgacTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGAc < 2:300677/149‑1 (MQ=255) tttGGCGATGGCGCCGAGCGCATGTTCGTCGCCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGCGCAGGGCGGCATGCAGGTGCGCTGCCGCACCGAGACCGTCGACTg > 4:177525/1‑149 (MQ=255) tGGCGTTGGCGCCGAGCGGATGTTCGTAGGCGCGCCGGTGTTCCCCAGTGGTCAACCTCTGGCGTTGTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACt < 2:142070/146‑1 (MQ=255) ggCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTggg < 5:210641/148‑1 (MQ=255) tGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTg > 5:257727/1‑148 (MQ=255) ggCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACaa < 6:341791/149‑1 (MQ=255) tgtTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCaa < 7:281921/149‑1 (MQ=255) ctGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACtt > 4:281729/1‑149 (MQ=255) tGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACgg > 6:96409/1‑81 (MQ=255) tGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACgg < 5:96409/81‑1 (MQ=255) gCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTc < 6:257727/147‑1 (MQ=255) ttcCACGGCAACGACAAGCAAGTCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGc > 7:57795/1‑132 (MQ=255) ttcCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGAGTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCt > 1:117279/1‑149 (MQ=255) aCGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGAc > 2:19503/1‑149 (MQ=255) aagcaagcCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCgg > 1:235921/1‑149 (MQ=255) cAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCg > 8:14127/1‑149 (MQ=255) gACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGc > 5:254639/1‑147 (MQ=255) tCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGtt > 4:69985/1‑149 (MQ=255) agggcagggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGtt < 5:116615/147‑1 (MQ=255) agggcagggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGtt < 6:254639/147‑1 (MQ=255) agggcagggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGtt < 2:117279/147‑1 (MQ=255) agggcagggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc > 5:6217/1‑148 (MQ=255) agggcagggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc < 3:360990/148‑1 (MQ=255) agggcGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTCTACTgg < 1:853/149‑1 (MQ=255) ggcggcATGCAGGTGCGCTGGCGCAACGAGACCGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTAATCGGCAAGGCCGGCGAGTTCTACTGGgt > 8:92046/1‑149 (MQ=255) cggcATGCAGGTGCGTTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAg < 4:204273/120‑1 (MQ=255) cggcATGCAGGTGCGTTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAg > 3:204273/1‑120 (MQ=255) tcggTGCGCCAGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTCTACTGGGTGTATccc > 6:239110/3‑147 (MQ=255) cggTGCGCCAGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc < 2:295006/130‑1 (MQ=255) cggTGCGCCAGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc < 2:290680/130‑1 (MQ=255) cggTGCGCCAGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc > 1:295006/2‑131 (MQ=255) cggTGCGCCAGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTc > 1:290680/2‑131 (MQ=255) ggggcgcTGGCGCACCGAGACGGTCGACTGGGGCGTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCTGTCAGCGGCAAGGCCGGCGAGTTCTACTGGGTGTATCCCGAgg < 7:171084/146‑1 (MQ=255) gTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCgg < 2:67744/122‑1 (MQ=255) gTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCgg > 1:67744/1‑122 (MQ=255) gcTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTCTACTGGGTGTATCCCGAGGGTATc > 6:117074/1‑149 (MQ=255) | TATTTCTCCACAGACGACTTCTTTGGCGATGGCGCCGAGCGCATGTTCGTCGGCGCGCCGGTGTTCCCCAGTGGCCAACCTCTGGCGTTCTTCCACGGCAACGACAAGCAAGCCAAGGACTCAGGGCAGGGCGGCATGCAGGTGCGCTGGCGCACCGAGACGGTCGACTGGGGCCTGTACGCCATCCGTTTCCACGACAAGTCGCCGCAACTCAATGTACGCCCGAACTTCGCCAACCTCGACCCGGTCAGCGGCAAGGCCGGCGAGTTCTACTGGGTGTATCCCGAGGGTATC > NC_002947/3630175‑3630468 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |