| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,026,304 | C→T | 5.9% | intergenic (‑102/+77) | PP_3550 ← / ← PP_3551 | transcriptional regulator EmrR/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,026,304 | 0 | C | T | 5.9% | 201.9 / 2.0 | 67 | intergenic (‑102/+77) | PP_3550/PP_3551 | transcriptional regulator EmrR/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base T (2/2); total (32/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.95e-01 | |||||||||||
GATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGCTCTGCGA > NC_002947/4026161‑4026448 | gATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCTCACCg > 2:204316/1‑149 (MQ=255) gTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAgg > 7:290797/1‑149 (MQ=255) gTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAgg > 3:245004/1‑149 (MQ=255) tCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGgc < 1:79464/149‑1 (MQ=255) tGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGGAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCTCACCGC‑CCCCGCAGgcgc > 3:42051/1‑149 (MQ=255) gAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGgcgcg > 5:128570/1‑149 (MQ=255) aaaGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGgcgcgc > 4:77632/1‑149 (MQ=255) aaaGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGgcgc < 8:107171/147‑1 (MQ=255) aaGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGc‑c < 8:159821/149‑1 (MQ=255) gTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCt < 5:306895/149‑1 (MQ=255) cGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGGAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCTCACCGC‑CCCCGCAGGCGCGC‑CCTGCgg < 4:42051/148‑1 (MQ=255) gggggAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGG‑GCGCGCCTGCgggg < 5:301219/149‑3 (MQ=255) gggAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGG‑GCGCGCCTGCgggggc < 3:26909/149‑5 (MQ=255) ccATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGacacac > 5:263647/1‑148 (MQ=255) cATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCTCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACaa < 1:204316/149‑1 (MQ=255) aTCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATcg > 6:42290/1‑138 (MQ=255) aTCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATcg < 5:42290/138‑1 (MQ=255) tGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCt > 8:345039/1‑149 (MQ=255) gCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCt < 2:223873/148‑1 (MQ=255) gCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCt > 1:223873/1‑148 (MQ=255) aGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAg < 6:305877/149‑1 (MQ=255) tgtgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGc > 4:152025/1‑149 (MQ=255) gtgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGc < 3:152025/148‑1 (MQ=255) tgtAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCg > 2:68226/1‑148 (MQ=255) tAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTaa < 3:77632/149‑1 (MQ=255) aaTATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGc < 3:61161/149‑1 (MQ=255) atatTACTCCATAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATAATCGTGTTTTCTGCCGCTCCCACCGC‑CCCCGCAGCCGCGC‑CCTCCGGCCCATAGCGACACACAATGCCGCCCCAGCCAGCGCCGGCCTAACGGCg > 4:68676/1‑149 (MQ=255) tatTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAg > 2:251499/1‑144 (MQ=255) tatTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAg < 1:251499/144‑1 (MQ=255) atTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCTGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAggg > 3:129708/1‑133 (MQ=255) atTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCTGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAggg < 4:129708/133‑1 (MQ=255) ttACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGtt < 6:51052/149‑1 (MQ=255) cTGCTTAGGCAGTTAATGTCTAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAAc < 3:68676/149‑1 (MQ=255) cTGCTTACGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAAc < 7:281384/149‑1 (MQ=255) tGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTaa < 4:167487/137‑1 (MQ=255) aGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTc > 3:242423/1‑149 (MQ=255) ggCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTc < 8:290797/148‑1 (MQ=255) aaTGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGcc > 3:48724/1‑148 (MQ=255) aTGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGcc > 5:68798/1‑147 (MQ=255) gTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAgc > 1:196838/1‑149 (MQ=255) tCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAgcg < 2:196838/149‑1 (MQ=255) tCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAgc < 6:68798/148‑1 (MQ=255) aaaGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGcc < 4:245004/149‑1 (MQ=255) aaGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGCGACCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAgcgc > 1:96434/1‑148 (MQ=255) gCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTc > 3:53908/1‑148 (MQ=255) cTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCAc > 5:33677/1‑149 (MQ=255) cATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGc > 5:105185/1‑149 (MQ=255) aGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCg > 2:154075/1‑149 (MQ=255) gCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGcc < 7:73803/135‑1 (MQ=255) gCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGcc > 8:73803/1‑135 (MQ=255) tATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAg > 7:122539/1‑120 (MQ=255) tATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAg < 8:122539/120‑1 (MQ=255) tGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATg > 1:354364/1‑149 (MQ=255) tGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATg > 3:241927/1‑149 (MQ=255) gAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCgcaag > 6:32913/1‑143 (MQ=255) gAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCgcaag < 5:32913/143‑1 (MQ=255) aaaTATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATgg < 2:354364/148‑1 (MQ=255) aaaTATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGc < 6:263647/149‑1 (MQ=255) aaTATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGc < 3:179002/148‑1 (MQ=255) cGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTccc > 6:349159/1‑149 (MQ=255) gtgtTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTccc < 6:33677/148‑1 (MQ=255) tgtTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCccac < 4:48724/149‑1 (MQ=255) tgtTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCccac > 8:285510/1‑149 (MQ=255) tGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGctct > 4:152716/1‑149 (MQ=255) ccGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGctct < 4:53908/147‑1 (MQ=255) ggTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGCTCTGCGa < 4:242423/149‑1 (MQ=255) ggTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGCTCTGCGa < 7:345039/149‑1 (MQ=255) | GATGGCGCAGGTCTGAAAGTTTTCGGGGGAGAAATGGGCCATCGTTGACTGCTCAGTTAAGTGTGTAGAAATATTACTGCTTAGGCAGTTAATGTCAAAGCCTTCATTAGGCAGCTATGAAATATTCGTGTTTTCTGCCGGTCCCACCGC‑CCCCGCAGGCGCGC‑CCTGCGGCCCATCGCGACACACAAGGCCGCCCCTGCCAGGGCCTGCGTAAGGGCGGTTAACGTGCTCGCAGGCCCAGCGCCTCCACCGCCCCGCAAGCAATGGCCATTCCCACCAGCTCTGCGA > NC_002947/4026161‑4026448 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |