Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,340,805 | G→A | 6.8% | A154T (GCC→ACC) | PP_3814 → | polyamine ABC transportersubstrate‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,340,805 | 0 | G | A | 6.8% | 173.0 / 2.5 | 59 | A154T (GCC→ACC) | PP_3814 | polyamine ABC transportersubstrate‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (28/27); new base A (2/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
GCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGACACCATCAAGC > NC_002947/4340669‑4340946 | gcgcGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGc > 8:108446/1‑148 (MQ=255) gcgcGACAAGATCGACCCACGCTACGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGc > 3:94339/1‑148 (MQ=255) gACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTa < 1:76809/149‑1 (MQ=255) aCGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAAt > 7:42615/1‑149 (MQ=255) tcCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGccc > 1:235773/1‑149 (MQ=255) tcCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGATCGGCTACAAAGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTAGACACAAAGGCCTCCGAAGGCAAGACAGCCGGGTACGACTGGCCGAGccc > 2:239172/1‑149 (MQ=255) ccATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCg < 2:208318/149‑1 (MQ=255) ccATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCg > 7:89125/1‑149 (MQ=255) aTGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGcc < 4:300336/122‑1 (MQ=255) aTGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGcc > 3:300336/1‑122 (MQ=255) gCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCt < 6:353845/148‑1 (MQ=255) tcttcttctCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGt > 4:126506/1‑111 (MQ=255) tcttcttctCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGt < 3:126506/111‑1 (MQ=255) cttcttctCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCctg < 4:94339/148‑1 (MQ=255) ttcttctCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCctgct > 8:20056/1‑149 (MQ=255) tcttctCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCctgctg > 6:172720/1‑149 (MQ=255) tcttctCCTTCGTACTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCctgctg > 1:298105/1‑149 (MQ=255) ctcCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGc < 3:324599/147‑1 (MQ=255) cTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCCACAAGCCGGGGGACTGGCCCGCGCGGTTCGACACCACGGCCTACCCCCGCAAGCGCGCCCGGTACAAATGGCCCCGCCCCGGCGGGCGCGCACTGGCCGAGCGGGccgccg > 8:337732/1‑149 (MQ=255) cTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACg > 3:115541/1‑149 (MQ=255) ttCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACgg > 5:141183/1‑149 (MQ=255) cGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACgg < 1:51031/147‑1 (MQ=255) gtacTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGt < 2:298105/146‑1 (MQ=255) tGCTGGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGcc < 3:113057/131‑1 (MQ=255) tGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACt > 7:200529/1‑127 (MQ=255) tGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACt < 8:200529/127‑1 (MQ=255) tGCTCGGCTACAACGAAGGCAAGCTAGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGcc > 4:113057/1‑131 (MQ=255) tCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGcc > 2:57824/1‑149 (MQ=255) tCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGc > 8:194988/1‑148 (MQ=255) ggCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGc < 7:194988/146‑1 (MQ=255) aCAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGACCTACCCCGGCAAGCGAGCCCTGTACAAATGTACCAGCCCCGGCCTGCTGGAACTGGCCCTGCTGGAAGAAGGCGTAGCCCCCGa > 8:255164/1‑148 (MQ=255) aCAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGACCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGa > 2:203947/1‑148 (MQ=255) aaCGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGc < 8:145397/128‑1 (MQ=255) aaCGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGc > 7:145397/1‑128 (MQ=255) aaCGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACaa > 8:336469/1‑149 (MQ=255) gCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTAc < 6:141183/149‑1 (MQ=255) gCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTAc > 7:243700/1‑149 (MQ=255) aaGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGc < 8:2121/53‑1 (MQ=255) aaGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGc > 7:2121/1‑53 (MQ=255) cGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTgg < 1:187637/104‑1 (MQ=255) cGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTgg > 2:187637/1‑104 (MQ=255) ggggCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctg < 7:20056/147‑1 (MQ=255) ggggCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctg < 7:336469/147‑1 (MQ=255) gggCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctggac < 7:108446/149‑1 (MQ=255) gCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctggacct < 8:89125/149‑1 (MQ=255) ccAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctggacctg > 3:67931/1‑149 (MQ=255) acaaGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGctggacctggac < 6:293790/149‑1 (MQ=255) aGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACcgc < 1:57824/149‑1 (MQ=255) gTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCtt > 7:109634/1‑149 (MQ=255) gTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCtt < 6:344419/149‑1 (MQ=255) gactggacCGCGCTGTTCGACACCAAGACCTACCCCGGCAAGCTAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCaa < 7:255164/149‑1 (MQ=255) gactggacCGCGCTGTTCGACACCAAGACCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCaa < 1:203947/149‑1 (MQ=255) cgcgCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGc < 6:319565/146‑1 (MQ=255) cgcgCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGc > 5:319565/1‑146 (MQ=255) gcgcTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGa < 5:172720/149‑1 (MQ=255) cgcTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGa > 6:204812/1‑148 (MQ=255) cGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGACACCATc > 8:258406/1‑148 (MQ=255) gaaacCAACGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCAAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGACACCATcaa < 4:115541/146‑1 (MQ=255) cacCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGACACCATcaagc < 2:235773/149‑1 (MQ=255) | GCGCGACAAGATCGACCCACGCTTCGTCTCCGACCATGGCGTCGGCTCATTCTTCTTCTCCTTCGTGCTCGGCTACAACGAAGGCAAGCTCGGGGCCAACAAGCCGGTGGACTGGACCGCGCTGTTCGACACCAAGGCCTACCCCGGCAAGCGAGCCCTGTACAAATGGCCCAGCCCCGGCGTGCTGGAACTGGCCCTGCTGGCCGACGGCGTAGCCCCCGACAAGCTGTACCCGCTGGACCTGGACCGCGCCTTCAAGAAGCTCGACACCATCAAGC > NC_002947/4340669‑4340946 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |