Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,484,727 | A→T | 5.9% | intergenic (+371/‑98) | PP_3976 → / → PP_3977 | isochorismatase family hydrolase/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,484,727 | 0 | A | T | 5.9% | 256.8 / 4.6 | 84 | intergenic (+371/‑98) | PP_3976/PP_3977 | isochorismatase family hydrolase/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (37/42); new base T (2/3); total (39/45) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-01 |
TCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTC > NC_002947/4484580‑4484875 | tCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGATAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGaataat > 2:221932/1‑149 (MQ=255) aaaCCCTGGCAGTTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGATCAGAGATATGCGGTCGTGATCAGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCa < 5:261321/149‑1 (MQ=255) aaCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAg < 4:161373/149‑1 (MQ=255) aaCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAg < 1:319942/149‑1 (MQ=255) tctcTGTCAGGTCGGAAGGGCCAAGCAGATGATGTTGGAGGCATATCGGTCATAGCATGCGGAAATGAACAGAGAAATTCGGGCGTGATACGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCGCTGAATAATCAg < 7:346823/145‑1 (MQ=255) cTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCt < 8:127186/149‑1 (MQ=255) tGGCAGGTAGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAAAAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAAAAATCatgagct > 8:346823/1‑143 (MQ=255) gCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAACA‑CGCAAAAAGCCCTGAATAATCAGGGCttt < 1:221932/149‑1 (MQ=255) gCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCttt < 3:141198/148‑1 (MQ=255) cAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGATTATTCAGGGCttttt < 3:104161/149‑3 (MQ=255) cAGGTCGCAAAGGCCAAGCAGCAGATGTTGGAGGCATATCGGTCACAGCATGCTTAAATGAACCGAGAAATGCGGGCGGGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGATTATTCAGGGCttttt < 6:124854/149‑3 (MQ=255) gTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAata < 7:169281/149‑1 (MQ=255) tCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATAACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAatat > 5:354466/1‑149 (MQ=255) aCGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCg > 3:248420/1‑148 (MQ=255) cAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTaga < 7:166994/149‑1 (MQ=255) gatgatGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTa > 6:107252/1‑145 (MQ=255) gatgatGTTGGAGGCATATCGATCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAga‑ga < 7:181052/149‑1 (MQ=255) gatgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GAtt > 5:169124/1‑148 (MQ=255) atgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTc > 5:229435/1‑148 (MQ=255) atgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCa < 7:39284/149‑1 (MQ=255) tgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCaa > 6:260323/1‑149 (MQ=255) ttGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GAtt < 3:147714/144‑1 (MQ=255) ttGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GAtt > 4:147714/1‑144 (MQ=255) ggCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTa > 3:238924/1‑149 (MQ=255) gCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTag > 6:297600/1‑133 (MQ=255) gCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTag < 5:297600/133‑1 (MQ=255) gCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTAt > 7:55900/1‑149 (MQ=255) atCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAAc > 8:260449/1‑139 (MQ=255) atCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAAc < 7:260449/139‑1 (MQ=255) atCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATcc > 1:186706/1‑147 (MQ=255) tCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTa < 4:248420/148‑1 (MQ=255) tCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGAGAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCACTGAATAATCAGGGCTTTGAATATGGCGGAATCGTAGA‑GATTCAAACCCTTATCCTAGGCt > 7:55229/1‑148 (MQ=255) aGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTc < 7:298718/126‑1 (MQ=255) aGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTc > 8:298718/1‑126 (MQ=255) aaTGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACt > 4:173768/1‑148 (MQ=255) cAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTc < 5:107252/149‑1 (MQ=255) cAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAACCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTc < 2:122710/149‑1 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCt > 4:362223/1‑149 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCt < 2:186706/149‑1 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCt > 3:53491/1‑149 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCACAAAA‑A‑CGAAAAAAGCCATGAATAATCAGGGCTTTGAATATGGCGGAAGCGTATA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCt > 7:63531/1‑149 (MQ=255) gagaAATGCGGGCGTGATCCGTATGACAAGTGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTATCTACAGACTTAATTTCTg < 8:55900/149‑1 (MQ=255) agaAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGTGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGa > 1:10036/1‑149 (MQ=255) aaaTGCGGGCGTGATCCGTATGACAAGGGTAAAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATc > 1:225515/1‑149 (MQ=255) gggCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTc > 8:29069/1‑138 (MQ=255) gggCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTc < 7:29069/138‑1 (MQ=255) gggCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAg < 4:238924/148‑1 (MQ=255) ggCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCt < 6:229435/149‑1 (MQ=255) gCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTc < 5:130994/149‑1 (MQ=255) tATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCttt < 5:260323/149‑1 (MQ=255) gACAAGGGTAGAAAATCGGAGCCCCAAAA‑AGCGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTAt > 1:221636/1‑149 (MQ=255) aCAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGTGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATg < 2:10036/148‑1 (MQ=255) gggTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTg > 1:357075/1‑149 (MQ=255) ggTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAATAGCCCTGAATAACCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATg > 1:29110/1‑143 (MQ=255) ggTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAACCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATg < 2:29110/143‑1 (MQ=255) gTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATc > 3:61507/1‑121 (MQ=255) gTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATc < 4:61507/121‑1 (MQ=255) tAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCgg > 6:243189/1‑122 (MQ=255) tAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCgg < 5:243189/122‑1 (MQ=255) tAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGt > 5:133610/1‑147 (MQ=255) gAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGc > 2:191446/1‑149 (MQ=255) gAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGc < 3:362223/149‑1 (MQ=255) aaaTGGGAGACCCAAAA‑T‑CGAAAAAAGCCCTGAATTATGAGGGCTTTGAATATGGCTGAAGCGTAGA‑GATTCAAACCCTTATCCTTGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTGGAGGTCCTTTATGGACTGTAAGCTa < 2:225515/149‑1 (MQ=255) aaaTCTGATCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTa < 8:55229/149‑1 (MQ=255) aaaTCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTa < 6:169124/149‑1 (MQ=255) aaTCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAAt < 8:2869/107‑1 (MQ=255) aaTCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAAt > 7:2869/1‑107 (MQ=255) aTCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc < 1:191446/149‑1 (MQ=255) tCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGTATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc > 1:261843/1‑148 (MQ=255) tCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc > 6:175407/1‑148 (MQ=255) cGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCa > 6:227634/1‑148 (MQ=255) ggAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCaaa < 3:173768/149‑1 (MQ=255) cccAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 6:354466/149‑1 (MQ=255) cccAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 4:53491/149‑1 (MQ=255) ccAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCggg > 7:230104/1‑149 (MQ=255) ccAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg > 1:6208/1‑148 (MQ=255) ccAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 2:6208/148‑1 (MQ=255) catattcaaaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTc > 4:342747/8‑149 (MQ=255) aaaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg > 1:77020/1‑137 (MQ=255) aaaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 2:77020/136‑1 (MQ=255) aaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCaa < 5:175407/149‑1 (MQ=255) cccTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc < 3:82615/124‑1 (MQ=255) cccTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGc > 4:82615/1‑124 (MQ=255) cTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAAc < 4:127193/127‑1 (MQ=255) cTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAAc > 3:127193/1‑127 (MQ=255) atCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTc < 8:230104/149‑1 (MQ=255) atCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTc < 5:227634/149‑1 (MQ=255) | TCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAA‑A‑CGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGA‑GATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTC > NC_002947/4484580‑4484875 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |