Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_002947 5,555,608 +GCC intergenic (‑84/+87) PP_4887 ← / ← PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 55556081 (0.040)18 (0.710)
+GCC
18/284 0.5 94.8% intergenic (‑84/+87) PP_4887/PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer
?NC_002947 5555609 = 1 (0.040)intergenic (‑85/+86) PP_4887/PP_4888 hypothetical protein/methyl‑accepting chemotaxis transducer

TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG  >  NC_002947/5555464‑5555755
                                                                                                                                                    |                                                                                                                                                   
tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCCAAACGGCCGCA‑‑‑AAGCGgcc                                                                                                                                                  >  4:17931‑M1/1‑145 (MQ=255)
tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGCAAGGGCCGCA‑‑‑TAGCGgcc                                                                                                                                                  >  2:3264‑M1/1‑145 (MQ=255)
             gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGCAAGGGCCGCC‑‑‑TAGCGgccccgggcatttacg                                                                                                                                     >  5:93332‑M1/1‑132 (MQ=255)
              aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTAATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCTAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgc                                                                                                                                    <  6:10184‑M1/148‑18 (MQ=255)
                   cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCC‑‑‑TAGCGgccccggcaatttccgcgtgta                                                                                                                               >  4:83947‑M1/1‑126 (MQ=255)
                     ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtat                                                                                                                              <  3:126771‑M1/147‑24 (MQ=255)
                             tGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaac                                                                                                                     <  5:133700‑M1/148‑33 (MQ=255)
                                 cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGGC‑‑‑TAGCGgccccggcactttccgcgtgtatgcaaccaacctgg                                                                                                                 >  6:61396‑M1/1‑112 (MQ=255)
                                 cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg                                                                                                                 <  6:52966‑M1/148‑37 (MQ=255)
                                  aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggg                                                                                                                <  4:95323‑M1/148‑38 (MQ=255)
                                       ttAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgc                                                                                                           <  2:104427‑M1/148‑43 (MQ=255)
                                                                cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtg                                                                                                                                 >  7:12650‑M1/1‑81 (MQ=255)
                                                                 ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgt                                                                                                                                <  8:12650‑M1/101‑22 (MQ=255)
                                                                                        aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCCAAAGGGCCCCA‑‑‑AAGCGgccccggcaatttacgcgggtatgcaacaaaccaggggctgctattcagccctttagcgacacaacgcccccaaaggaccccccaggct                                                            >  6:66709‑M1/1‑57 (MQ=255)
                                                                                                   gCTCAGGTGTGGGAGCGGCCTTGTGTAGCGCAAAGGCCCCCAAGCCGGCCCCGCCAATTGACCCGGTTTTCAACAAACCAGGGGCTGGTATTCCGCCCATTGGCGCCACCAAGCCCACAAAAGACCGCGCACGCGTAACGccccgc                                                    >  6:36688/1‑143 (MQ=255)
                                                                                                        ggTGGGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggc                                           <  6:93332‑M1/147‑107 (MQ=255)
                                                                                                                     ccTTGGGTCGCGAAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgc                             <  2:32979‑M1/148‑121 (MQ=255)
                                                                                                                                          gCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcat          >  5:94040‑M1/1‑8 (MQ=255)
                                                                                                                                            a‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca       >  6:82853‑M1/1‑6 (MQ=255)
                                                                                                                                            a‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca       <  4:77722‑M1/148‑143 (MQ=255)
                                                                                                                                                    ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcacc  <  5:66709‑M1/148‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCA‑‑‑TAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG  >  NC_002947/5555464‑5555755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.