| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.040) | 18 (0.710) +GCC |
18/284 | 0.5 | 94.8% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.040) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555464‑5555755 | tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCC‑AAACGGCCGCA‑‑‑AAGCGgcc > 4:17931‑M1/1‑145 (MQ=255)tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCG‑CAAGGGCCGCA‑‑‑TAGCGgcc > 2:3264‑M1/1‑145 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCG‑CAAGGGCCGCC‑‑‑TAGCGgccccgggcatttacg > 5:93332‑M1/1‑132 (MQ=255) aaaTTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTAATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCT‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgc < 6:10184‑M1/148‑18 (MQ=255) cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCC‑‑‑TAGCGgccccggcaatttccgcgtgta > 4:83947‑M1/1‑126 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtat < 3:126771‑M1/147‑24 (MQ=255) tGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaac < 5:133700‑M1/148‑33 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGGC‑‑‑TAGCGgccccggcactttccgcgtgtatgcaaccaacctgg > 6:61396‑M1/1‑112 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctgg < 6:52966‑M1/148‑37 (MQ=255) aGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggg < 4:95323‑M1/148‑38 (MQ=255) ttAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgc < 2:104427‑M1/148‑43 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtg > 7:12650‑M1/1‑81 (MQ=255) ttttGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgt < 8:12650‑M1/101‑22 (MQ=255) aTAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCC‑AAAGGGCCCCA‑‑‑AAGCGgccccggcaatttacgcgggtatgcaacaaaccaggggctgctattcagccctttagcgacacaacgcccccaaaggaccccccaggct > 6:66709‑M1/1‑57 (MQ=255) gCTCAGGTGTGGGAGCGGCCTTGTGTAGCGCAAAGGCCCCCAAGCCGGCCCCGCCAATTGACCCG‑GTTTTCAACAAACCAGGGGCTGGTATTCCGCCCATTGGCGCCACCAAGCCCACAAAAGACCGCGCACGCGTAACGccccgc > 6:36688/1‑143 (MQ=255) ggTGGGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggc < 6:93332‑M1/147‑107 (MQ=255) ccTTGGGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgc < 2:32979‑M1/148‑121 (MQ=255) gCA‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcat > 5:94040‑M1/1‑8 (MQ=255) a‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca > 6:82853‑M1/1‑6 (MQ=255) a‑‑‑TAGCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca < 4:77722‑M1/148‑143 (MQ=255) ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagcacc < 5:66709‑M1/148‑148 (MQ=255) | TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCA‑‑‑TAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTG > NC_002947/5555464‑5555755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |