New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5680031	46 (1.780)	5 (0.200)	3/276	3.4	10.2%	coding (87/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5680077	44 (1.790)					coding (133/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCAGGCCGATTCACCGCTGCA  >  NC_002947/5679884‑5680177                                                                                                                                                    |                                                                                                                                                   gACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCcgc                                                                                                                                                    >  3:34263/1‑148 (MQ=255)  aCGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGCCCTGCCCGAGGCCCAGGCCCATTACATTGGCcgcg                                                                                                                                                   >  6:91592/1‑148 (MQ=255)      aTCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCCAACCCATGAGACTGTCCCGCTTCTTCATCGCCGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGtgct                                                                                                                                               >  8:5152/1‑148 (MQ=255)         gACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGACCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGtgctgc                                                                                                                                             >  6:137041/1‑147 (MQ=255)             cGCCCGCTCCCACAGGGTATCTGCGGCTCTCTATTTACCGAGCACACCCATGAGACTGTCCCGCTTCATCCTCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATg                                                                                                                                        <  3:100315/148‑1 (MQ=255)              gCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATTGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATg                                                                                                                                        >  8:17962/1‑147 (MQ=255)                ccGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTAGGCGCGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCa                                                                                                                                     >  5:81216/1‑148 (MQ=255)                      ccACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCgg                                                                                                                                >  5:53263/1‑147 (MQ=255)                                tCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGt                                                                                                                       >  1:29964/1‑146 (MQ=255)                                     gTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAg                                                                                                                   <  4:34263/145‑1 (MQ=255)                                     gTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCACCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGc                                                                                                                     <  1:137832/143‑1 (MQ=255)                                            tATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATg                                                                                                         >  7:100198/1‑148 (MQ=255)                                            tATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATg                                                                                                         >  4:8773/1‑148 (MQ=255)                                               ttACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCa                                                                                                      >  2:100098/1‑148 (MQ=255)                                                    gAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCgg                                                                                                  >  2:39536/1‑147 (MQ=255)                                                       cAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAg                                                                                              <  2:117549/148‑1 (MQ=255)                                                            ccATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGCGGCCCCGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGCCGCCGTGCAGCTGTTCGCTGGCAGCGGCCAGGAATa                                                                                         >  3:113849/1‑148 (MQ=255)                                                              aTGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATAcc                                                                                       >  1:29771/1‑148 (MQ=255)                                                                  gaCTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTg                                                                                    <  6:53263/147‑1 (MQ=255)                                                                   aCTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGt                                                                                  <  6:118598/148‑1 (MQ=255)                                                                       tCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGt                                                                              >  3:2023/1‑148 (MQ=255)                                                                        cccGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGtt                                                                             >  7:69228/1‑148 (MQ=255)                                                                                 tcATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGCCGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGt                                                                    >  3:30763/1‑148 (MQ=255)                                                                                  cATCGACGAACAACTGAGCCTTGGAGAGCACGACCTGCCCGAGGCCCAGGCACATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGGTCGATGGCAGCTGCCAGGAATACCGTGGTCAGTTGCTCGCGGTg                                                                   >  6:129364/1‑148 (MQ=255)                                                                                   aTCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTgg                                                                  >  1:77622/1‑148 (MQ=255)                                                                                    tCGCCGCTCGCCTTAGCGTTGGGGTGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGGGCATGGCACCCGGCGACGCCGTGCATCTGTTCGATGGCATCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTgg                                                                  <  8:122364/147‑1 (MQ=255)                                                                                    tCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTgg                                                                  <  5:50445/147‑1 (MQ=255)                                                                                       ccGCCCCCCTGCGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGAGGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCaa                                                              <  5:15774/147‑1 (MQ=255)                                                                                       aCGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCTCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCa                                                               <  5:130364/147‑1 (MQ=255)                                                                                            ccccTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGaaaa                                                         <  6:107121/148‑1 (MQ=255)                                                                                              ccTGAGCCTTGGCGAGCACGACGTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACt                                                       <  2:29771/148‑1 (MQ=255)                                                                                                   gCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTcc                                                   <  3:40492/147‑1 (MQ=255)                                                                                                   gCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTcc                                                   <  5:80727/147‑1 (MQ=255)                                                                                                    ccTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCcgc                                                 <  7:51911/148‑1 (MQ=255)                                                                                                           gAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGcc                                          <  5:137041/148‑1 (MQ=255)                                                                                                           gAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGcc                                          >  4:18246/1‑148 (MQ=255)                                                                                                             gCACTACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGGGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGGTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCtt                                        <  8:43103/148‑1 (MQ=255)                                                                                                                  aCCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCa                                   >  6:25135/1‑148 (MQ=255)                                                                                                                    cTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAgg                                 >  1:13719/1‑148 (MQ=255)                                                                                                                         cGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCttt                            <  7:104702/148‑1 (MQ=255)                                                                                                                            ggcccaggcccaTTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGcc                         <  1:100098/148‑1 (MQ=255)                                                                                                                               ccaggcccaTTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGc                      <  6:81216/148‑1 (MQ=255)                                                                                                                                 aggcccaTTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCa                    <  4:14248/148‑1 (MQ=255)                                                                                                                                      caTTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCAGGCCg               >  8:31951/1‑148 (MQ=255)                                                                                                                                        ttACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCAGGCCGAt             >  3:42129/1‑148 (MQ=255)                                                                                                                                               ggCCGCGTGCTGCGCATGGCCCCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACGGTCCGCGTCAGCCTAGACCAGGCCTTTGCCGGCCAGGCCGATTCACCGc      >  1:110696/1‑148 (MQ=255)                                                                                                                                                   gcgTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCAGGCCGATTCACCGCTGCa  <  8:69228/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GACGCATCGACACGCCCGCTCCCACAGGGGATCTGCGTCTCTCTATTTACCGAGCAAACCCATGAGACTGTCCCGCTTCTTCATCGACGCCCCCCTGAGCCTTGGCGAGCACGACCTGCCCGAGGCCCAGGCCCATTACATTGGCCGCGTGCTGCGCATGGCACCCGGCGACGCCGTGCAGCTGTTCGATGGCAGCGGCCAGGAATACCGTGGTCAGTTGCTCGAGGTGGGCAAGAAAACTGTCCGCGTCAGCCTTGACCAGGCCTTTGCCGGCCAGGCCGATTCACCGCTGCA  >  NC_002947/5679884‑5680177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.