| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 353066 | 16 (0.620) | 5 (0.210) | 4/272 | 3.0 | 19.2% | intergenic (+33/+85) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | = 353120 | 27 (1.120) | intergenic (+87/+31) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAG > NC_002947/352976‑353267 | gTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCgc < 7:105706‑M2/147‑3 (MQ=255) cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCCCCCGCGCCCACCCGGTTGGTGAGCTCTGTGTGGGCGCGGGCGTGGCCGCGCAGGGCCGCGCACCGGcc > 1:97756/1‑148 (MQ=255) gCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCCCGCCCGCTCCCCCAGGGTTGCTGCGATGGCTGGGGGAGCGGGCGGGGCCGCGCAGGGCCGCGAAGCGGccccca > 1:79906/1‑146 (MQ=37) cTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCGCCCACAGGTTTGCGGCGATCTCTGTGGGAGCCGGCGTGCCCGCGACGGGCCCCGAAGCGGCCCCaaat > 1:94986/1‑146 (MQ=38) aTGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGGTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCt > 8:95340/1‑147 (MQ=255) cTTCGCGCGGGAGCGTCGATCGCTGATCCATTGCCCGGGGGGGCTTTGCAGCCCTGCGCGGGCACCCCCGCGCCCACAGGTTTCCGGACATCTCTGTCGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAAc < 3:59900/148‑1 (MQ=37) ttCGCGCGGGAGCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAAcc < 7:89371/148‑1 (MQ=255) cgGGATCGGCGTGCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGtt < 1:87769/148‑1 (MQ=255) cccATTGCCCGGGGCGGCTTGCCAGCCCTTCGCGGGCCCCCCCGCCCCCACAGGTTTCCTGAGAGGTCTGGGGGCGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTgg < 5:105930/147‑1 (MQ=37) ccATTGACCGGGGCTGCTTTGCAGCCCTGCGCGGGCACGCCCGGTCCCACAGGTTTGCTGAGATCTCTGTGGGTGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTgg < 2:97756/147‑1 (MQ=255) aTTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGGTGGGATGTCTGTGGGCGCGGGCGTGCCCGCGCAGGGCCGCGCAGCGGCCCCCCTTGCTTCAACCGGGGGTCTTGCCGCGCAGCGCGGGGt > 7:80176/1‑146 (MQ=25) ttGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa < 7:95340/148‑1 (MQ=255) cGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg < 4:89183/148‑1 (MQ=255) gggCTGCTTTGCAGCCCTGCGCGGGCACGCCCGCGCCCACCGGTTTGGTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGt < 5:78824/148‑1 (MQ=38) gCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGa < 2:15892/146‑1 (MQ=255) gggCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCaccacc < 8:64570/147‑1 (MQ=255) cccGCTCCCACAGGTTTGCGGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGt < 6:51007/148‑1 (MQ=255) gCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCgcgaagggctgcaaagcagccccggtcaatggatcagcgaacgacgatcccgcgcgaa < 3:80122‑M2/102‑59 (MQ=255) cTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCgcgaagggctgcaaagcagccccggtcaatggatcagcgaacgacgatcccgcgcgaag > 4:80122‑M2/1‑43 (MQ=255) tCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATcc > 7:13460/1‑148 (MQ=255) tCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTGATcc > 6:19083/1‑148 (MQ=255) ccACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCACGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCt > 1:100216/1‑147 (MQ=255) cacaGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCt > 6:131108/1‑146 (MQ=255) tGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCtt > 1:100674/1‑148 (MQ=255) tGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCtt < 3:22913/148‑1 (MQ=255) gttgtctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttg < 2:94986/142‑1 (MQ=255) tctGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCg > 6:130714/1‑148 (MQ=255) gtgGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt < 6:28155/148‑1 (MQ=255) gAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGa < 5:3566/147‑1 (MQ=255) gggCGTGCCCgcgaagggctgcaaagcagccccggtcaatggatcagcgaacgacgatcccgcgcgaagccatgtaggccttggcctccggcactgtgtactcgccaaagtggaagatgctggccgccagcgcggtgctggcggccag > 6:3566‑M2/1‑10 (MQ=255) ccgcgaagggctgcaaagcagccccggtcaatggatcagcgaacgacgatcccgcgcgaagccatgtaggccttggcctccggcactgtgtactcgccaaagtggaagatgctggccgccagcaccgcgctggcatgcccttccagaa > 7:64570‑M2/1‑2 (MQ=255) ccgcgaagggctgcaaagcagccccggtcaatggatcagcgaacgacgatcccgcgcgaagccatgtaggccttggcctccggcactgtgtactcgccaaagtggaagatgctggccgccagcaccgcgctggcatgcccttccagaa < 5:98995‑M2/148‑147 (MQ=255) cgcgAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAg < 8:105706/148‑1 (MQ=255) | GTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCAGGCACGCCCGCTCCCACAGGTTTGCTGAGATCTCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAG > NC_002947/352976‑353267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |