New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 612221	NA (NA)	8 (0.180) +GGGGGCATCCAGGCTGGTCAATCTGTTCTGTAACGA	6/210	5.7	11.2%	intergenic (+152/+65)	PP_0526/dxs	transposase/1‑deoxyxylulose‑5‑phosphate synthase
	?	NC_002947	= 2436665	85 (1.390)					intergenic (+243/‑416)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTCAGCCAGCATTT  >  NC_002947/612081‑612365                                                                                                                                             |                                                                                                                                                   cAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTggg                                                                                                                                              <  8:312222/147‑1 (MQ=32) cAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGca                                                                                                                                            >  6:97835/1‑149 (MQ=34)     gCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACg                                                                                                                                        <  6:211625/149‑1 (MQ=38)         cccgcccAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCgg                                                                                                                                    <  4:6483/149‑1 (MQ=40)              ccAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATc                                                                                                                               <  5:91012/149‑1 (MQ=255)                 aaCTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCggg                                                                                                                            <  3:191892/149‑1 (MQ=255)                  aCTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGgc                                                                                                                           <  5:105748/149‑1 (MQ=255)                       cGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑Agg                                                                                                                     <  4:156593/149‑1 (MQ=255)                          gCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGca                                                                                                                                            <  1:25577/124‑1 (MQ=35)                          gCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGca                                                                                                                                            >  2:25577/1‑124 (MQ=35)                          gCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCcg                                                                                                                  >  1:348493/1‑149 (MQ=255)                             gTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCcgtc‑g                                                                                                              <  6:307609/149‑1 (MQ=255)                             gTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCcgtc‑g                                                                                                              >  5:55504/1‑149 (MQ=255)                                   aaTGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAg                                                                                                        >  8:316015/1‑149 (MQ=255)                                       cTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCggg                                                                                                    >  5:348930/1‑149 (MQ=255)                                          gggAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCAGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGt                                                                                                   <  3:53466/147‑1 (MQ=255)                                             agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCAcc                                                                                              >  4:80346/1‑149 (MQ=255)                                                       tGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGaaa                                                                                       <  8:241829/146‑1 (MQ=255)                                                       tGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGaaa                                                                                       <  5:312599/146‑1 (MQ=255)                                                       tGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGa                                                                                    >  5:150973/1‑149 (MQ=255)                                                         gCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGAcc                                                                                  <  7:96157/149‑1 (MQ=255)                                                         gCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGAc                                                                                   <  6:55504/148‑1 (MQ=255)                                                            cGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTa                                                                               <  3:80346/149‑1 (MQ=255)                                                                      tACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GGAGGAGCGGCTTCACCCGCGAAAGTACCCGAGAGCCCTAGc                                                                     >  8:326529/1‑149 (MQ=25)                                                                         cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGaa                                                                                        >  3:258904/1‑127 (MQ=255)                                                                         cTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGaa                                                                                        <  4:258904/127‑1 (MQ=255)                                                                          tCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTgg                                                                 >  5:103321/1‑149 (MQ=255)                                                                            gAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGc                                                                <  6:73506/148‑1 (MQ=255)                                                                            gAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGc                                                                >  4:120709/1‑148 (MQ=255)                                                                                   cTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCgg                                                         <  2:348493/148‑1 (MQ=255)                                                                                        agagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCtt                                                    >  7:333859/1‑148 (MQ=255)                                                                                        agagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCtt                                                    <  8:333859/148‑1 (MQ=255)                                                                                         gagGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCa                                                  <  5:97835/149‑1 (MQ=255)                                                                                                     gTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGa                                      <  6:150973/149‑1 (MQ=255)                                                                                                            cTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGc                               <  3:120709/149‑1 (MQ=255)                                                                                                            cTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTAATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGc                               <  7:296125/149‑1 (MQ=255)                                                                                                             tGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGcc                              >  5:255632/1‑149 (MQ=255)                                                                                                              gAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTgg                                                                 <  7:245831/113‑1 (MQ=255)                                                                                                              gAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTgg                                                                 >  8:245831/1‑113 (MQ=255)                                                                                                               aaaaTTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCg                             >  3:153076/1‑148 (MQ=255)                                                                                                                        cTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGccc                   >  2:281354/1‑149 (MQ=255)                                                                                                                         tCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTgg                                                                 <  8:98370/102‑1 (MQ=255)                                                                                                                         tCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTgg                                                                 >  7:98370/1‑102 (MQ=255)                                                                                                                            ggacATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑GGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGAACCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCCAAGCCACCATCCCGGCAGCATCCAGCCCgaa                >  8:161512/4‑146 (MQ=38)                                                                                                                               cATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGCGAGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACt              >  1:253616/1‑148 (MQ=255)                                                                                                                               cATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACt              >  6:306446/1‑147 (MQ=255)                                                                                                                                   gAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTcagcca        <  7:316015/149‑1 (MQ=255)                                                                                                                                      tctcCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTCGGTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTcagccag       >  1:253107/1‑148 (MQ=255)                                                                                                                                          cTACAGTGGGCACACGTCGGTGATCGGGCGC‑GGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTCAGCCAGCa     <  7:161512/145‑1 (MQ=255)                                                                                                                                          cTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTCAGCCAGCAttt  <  6:255632/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   CAACGCAGCCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACAGTGGGCACACGTCGGTGATCGGGCGC‑AGGCCGTC‑GTAGGAGCGGGTTCACCCGCGAAAGGACCCTAGAGCCCGAGCCTGGCCATGCGGGCCTTCACCGAAGCCTCGATCCCGGCCGCATCCAGCCCGCACTCAGCCAGCATTT  >  NC_002947/612081‑612365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.