| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 1 (0.020) | 57 (0.950) +GGC |
49/276 | 0.3 | 98.3% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 1 (0.020) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA > NC_002947/4980437‑4980726 | tgGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑gg < 8:68674/149‑1 (MQ=255) gCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCTGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggc > 5:111808‑M1/1‑146 (MQ=255) ccGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggcc > 7:187498‑M1/1‑145 (MQ=255) aaCACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCTGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgct < 6:111808‑M1/149‑8 (MQ=255) acacAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACCAGGACAGTAACGACAGCCGCGTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggcagctt > 8:143481‑M1/1‑141 (MQ=255) cacaGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgcttt > 2:20653‑M1/1‑140 (MQ=255) acaGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttg < 8:187498‑M1/149‑11 (MQ=255) caGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgc < 7:131063‑M1/149‑12 (MQ=255) aGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcg > 6:79866‑M1/1‑137 (MQ=255) aGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgc > 3:117239‑M1/1‑137 (MQ=255) gCGGCCGGTGACCAGGCTTTGCCATTGATAGACCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTATT‑‑‑GGggccgcaaagcggccc < 6:10083‑M1/148‑17 (MQ=255) gCCGGGTACCAGGCGCTTCCTTTGATAGAACGGGGCGGGGGCCGCGGGGGCAGGCAGAACCATCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaat < 8:174878‑M1/149‑21 (MQ=255) gTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattac > 2:270511‑M1/1‑125 (MQ=255) cAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacac > 2:99548‑M1/1‑120 (MQ=255) cAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggcaccaattacaaacac > 6:235788‑M1/1‑120 (MQ=255) cAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggcccctttgcggcccccattacaaacac > 6:28079‑M1/1‑120 (MQ=255) ccATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCGTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaa > 5:345563‑M1/1‑111 (MQ=255) tAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaat < 6:45237‑M1/148‑45 (MQ=255) aCGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcat > 2:359035‑M1/1‑100 (MQ=255) cggggcggggGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaatttcaaacaccaaagccaatacaataataag > 3:189319‑M1/1‑99 (MQ=255) gtggcgcgggcAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACCAGGCCAGTAACGACAGCCGCTTCATTCGCGTGCACGTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacgagaacgaacgccaatcgaatcatca > 8:315969‑M1/3‑98 (MQ=255) ggggcggggGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTATT‑‑‑GGggccgctttgcggccccaattacaaacaccaaacccaaaacaataatcagg > 2:169221‑M1/1‑98 (MQ=255) gcgggggcagcgggggcaGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtca > 6:101583‑M1/1‑95 (MQ=255) cgggggcagcgggggcagGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcat < 1:359035‑M1/149‑56 (MQ=255) cgggggcctGGAGAAACACGACCATCAATGGGTAAAACGCCCTTAACGACATCCCCTTAATTGGCGTGTAACTTCACATTTTTGGGGGCGCTCTTGCGGCCCCAATTACAGACACCAAAGCCAATACAATCATCAGGTCATCTGAatga < 1:99548/149‑1 (MQ=255) caggcagAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatct > 6:125399‑M1/1‑79 (MQ=255) caggcagAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatct < 5:125399‑M1/136‑58 (MQ=255) gcagAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcat > 8:198000‑M1/1‑76 (MQ=255) gcagAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcat < 5:79866‑M1/149‑74 (MQ=255) cagcaccagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtg < 5:101583‑M1/149‑81 (MQ=255) atcaagGGTAACAAGGCCAGTAACGACAGCCGATTCAATCGCGTGAACCTTCACATTCTT‑‑‑GGtgccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcag < 7:143481‑M1/147‑88 (MQ=255) agcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcag < 7:198000‑M1/149‑88 (MQ=255) ggggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtgga > 3:330921‑M1/1‑57 (MQ=255) ggggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcagcaggtcatctgaatgatggtctgcatgatggtgctttcagtgga > 1:243409‑M1/1‑57 (MQ=255) gggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaatttcaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaa > 3:300209‑M1/1‑56 (MQ=255) ggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaat < 6:288912‑M1/149‑95 (MQ=255) ggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctt > 6:132715‑M1/1‑55 (MQ=255) ggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctt < 5:132715‑M1/138‑84 (MQ=255) gCCAGTAACGACATCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcagttcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttgg < 1:169221‑M1/149‑103 (MQ=255) cAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggca > 2:287568‑M1/1‑45 (MQ=255) tAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattg > 1:205742‑M1/1‑42 (MQ=255) aCGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaataaaatcataaggtcatctgaatgatggtctgcatgatgctgctttcagtggaaatggtcttggcattgg > 4:220546‑M1/1‑40 (MQ=255) ccGCTTCATTCGCGTGAACCTTCACATTCTTG‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatg > 1:224169‑M1/1‑34 (MQ=255) gCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagtt > 7:25720‑M1/1‑31 (MQ=255) cTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagtt > 1:228972‑M1/1‑30 (MQ=255) cTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagtt < 2:228972‑M1/148‑119 (MQ=255) ttCGCGTGAACCTTCACATTCTT‑‑‑GGggccgggtttcggccccaattacaaacaccaaagccaatacaatgatgaggtgatctgaatgatggggtgcatgatggtgctttgagtggaaatggtgttggcattggcctggtatttgctgtg > 2:125758‑M1/1‑25 (MQ=255) tCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcat < 2:130483‑M1/79‑56 (MQ=255) tCGCGTGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcat > 1:130483‑M1/1‑24 (MQ=255) tGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggt > 3:326406‑M1/1‑19 (MQ=255) tGAACCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggt < 4:326406‑M1/86‑68 (MQ=255) aCCTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgat < 5:235788‑M1/149‑134 (MQ=255) cTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcct < 2:311287‑M1/125‑112 (MQ=255) cTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtg < 7:300522‑M1/94‑81 (MQ=255) cTTCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtg > 8:300522‑M1/1‑14 (MQ=255) tCACATTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatgggctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcagg > 6:337397‑M1/1‑12 (MQ=255) cacaTTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcagg < 2:243409‑M1/148‑138 (MQ=255) acaTTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcaggt < 8:10010‑M1/148‑139 (MQ=255) caTTCTT‑‑‑GGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggccttgtagttgctctgcgccttgatcaggttt < 1:20653‑M1/149‑141 (MQ=255) ttCTT‑‑‑GGggacgctttgcggccccaattacaaacaccaaagccaatacaatcatcatgtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcaggtttac < 5:28079‑M1/149‑143 (MQ=255) | TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTT‑‑‑GGCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA > NC_002947/4980437‑4980726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |