| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3948279 = | 75 (1.070) | 6 (0.090) | 6/270 | 8.0 | 8.4% | coding (361/531 nt) | PP_3484 | two‑component system response regulator |
| ? | NC_002947 | 3948317 = | 59 (0.870) | coding (323/531 nt) | PP_3484 | two‑component system response regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGCAATGCCACTTCGTGCTGATCACCGCCCACCCCACCGTCGAGGTGCGTGAGCGGGCCGCCGAACTCGGAGTGAGTCACGTCCTGTTCAAGCCGTTCCCACTGATGGAGCTGGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3948430‑3948279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccAGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTT > NC_002947/3948317‑3948464 CAGGCAATGCCACTTCGTGCTGATCACCGCCCACCCCACCGTCGAGGTGCGTGAGCGGGCCGCCGAACTCGGAGTGAGTCACGTCCTGTTCAAGCCGTTCCCACTGATGGAGCTGGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGC > 6:248548/1‑149 GCAATGCCACTTCGTGCTGATCACCGCCCACCCCACCGTCGAGGTGCGTGAGCGGGCCACCGAACTCGGAGTGAGTCACGTCCTGTTCAAGCCGTTCCCACTGATGGAGCTGGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCC < 8:163404/149‑1 CTGGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCCGGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATT > 2:340975/1‑149 GGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCCAGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGC > 5:238550/1‑149 CGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCCAGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGCCT < 6:238550/149‑1 GTGCGATCTTCGACCTGCTGGGCATCGAGCGCCAGCTCCATCAGTGGGAACGGCCTGAACAGGACGTGACTCACTCCGAGTTCGGC < 5:411277/86‑1 GTGCGATCTTCGACCTGCTGGGCATCGAGCGCCAGCTCCATCAGTGGGAACGGCATGAACAGGACGTGACTCACTCCGAGTTCGGC > 6:411277/1‑86 CGACCTGCTGGGCATCGAGCGCCGGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGCCTGTTCTTGC < 1:340975/144‑1 CAGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTT > 7:107962/1‑149 CAGGCAATGCCACTTCGTGCTGATCACCGCCCACCCCACCGTCGAGGTGCGTGAGCGGGCCGCCGAACTCGGAGTGAGTCACGTCCTGTTCAAGCCGTTCCCACTGATGGAGCTGGCGCGTGCGATCTTCGACCTGCTGGGCATCGAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3948430‑3948279‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccAGCTCCATCAGTGGGAACGGCTTGAACAGGACGTGACTCACTCCGAGTTCGGCGGCCCGCTCACGCACCTCGACGGTGGGGTGGGCGGTGATCAGCACGAAGTGGCATTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTT > NC_002947/3948317‑3948464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |