New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 48081796 (0.090)26 (0.410) 12/256 5.3 44.3% intergenic (‑288/‑267) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
?NC_002947 5988765 = 60 (0.940)intergenic (+59/‑487) kefB‑III/PP_mr64 glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
Rejected: Coverage evenness skew score above cutoff.

GGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808033‑4808325
                                                                                                                                                  |                                                                                                                                                  
tggCAATGGTCGGAATTAGCTCTTTGGCGGTTAGGTTTTAGTCGGGAGGTTTTCAGCGCCTTGTTGGTGTTCGGCGGGTTATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgc                                                                                                                                                   <  5:295088/147‑2 (MQ=25)
  tctttGGGTGGATTTGGCGCTTTGGGGGTTAGGTTTTGGGAGTGAGTTTTTCAGTGCCTGGTAGGTGTTGGGCGGTTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgcgg                                                                                                                                                 <  8:325562/144‑4 (MQ=18)
  gCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGACTGGGAGGTGTTCGCCGGGAGAGTTGGATCGCCTGGGAGATCGAGCGCCGCCCGCGAGgc                                                                                                                                                >  3:52392/1‑149 (MQ=38)
    aaTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTGGCCGGGAGAGTGTCAGCGCCTCGGAGATCGAGCGCCGCCCGCGCGgcgc                                                                                                                                              >  7:30274/1‑149 (MQ=38)
        ggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGGTCGCCGGGGGATTTTCAGCGCCTGGGAGCTGTTCGCCCGGAGAGTTTCATCGCCAGGGATATAGAGGGACGCACGCGAGgcgcttcc                                                                                                                                          >  7:156950/1‑145 (MQ=255)
        ggCGCAATTCGCGCTGTCGCGGGTAGGCTGTTGGCGGCAGGTGTTCTGGGTCTGGGTGGTGTTCGGCGGGTGTTTTGCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttcg                                                                                                                                          <  8:30274/149‑5 (MQ=16)
        gcccgAAGTCTCGCTTTGGCGGGTCGGTCTTGGGCGGCAGGCTCGCCGCGCCTGGGAGGTGTTCGCCGGCTGTTGTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttc                                                                                                                                           <  2:260623/144‑4 (MQ=21)
            gAATTGGGGCGTTGGGGGTTAGGTTTTTGGCGGGAGGTTTGCTGGTCCGGGTAGGTGTTGGCCGGTTGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcggg                                                                                                                                      <  2:92761/149‑1 (MQ=16)
                                                                                                                                              ccgcGAAGCGCCGCGCGGGCGGCGCTCGATGTCACAGGCGGTGATAATCCTGCGGCTACGAGCTCAAAATTCCAACGCCGTCCACTCAAAATTCGAAGGCCGCGCCCTCTAGATTCCAGCGCCGCGGCCCGTGGAAACTGcatcaacgt    >  4:259393/1‑147 (MQ=255)
                                                                                                                                              ccgcGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCCCCTCCCATCGAAAATCcaacaaca     >  7:279379/1‑148 (MQ=255)
                                                                                                                                                 cgAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGACCACTCAAAATTCCAACGACGCACCCTCAAAATTCAAACTCCGACTCCCCTCGAAAATCAAACAACAAAg  >  8:140243/1‑148 (MQ=38)
                                                                                                                                                  |                                                                                                                                                  
GGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808033‑4808325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.