New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	6 (0.090)	26 (0.410)	12/256	5.3	44.3%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	60 (0.940)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
Rejected: Coverage evenness skew score above cutoff.

GGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808033‑4808325                                                                                                                                                   |                                                                                                                                                   tggCAATGGTCGGAATTAGCTCTTTGGCGGTTAGGTTTTAGTCGGGAGGTTTTCAGCGCCTTGTTGGTGTTCGGCGGGTTATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgc                                                                                                                                                   <  5:295088/147‑2 (MQ=25)   tctttGGGTGGATTTGGCGCTTTGGGGGTTAGGTTTTGGGAGTGAGTTTTTCAGTGCCTGGTAGGTGTTGGGCGGTTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgcgg                                                                                                                                                 <  8:325562/144‑4 (MQ=18)   gCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGACTGGGAGGTGTTCGCCGGGAGAGTTGGATCGCCTGGGAGATCGAGCGCCGCCCGCGAGgc                                                                                                                                                >  3:52392/1‑149 (MQ=38)     aaTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTGGCCGGGAGAGTGTCAGCGCCTCGGAGATCGAGCGCCGCCCGCGCGgcgc                                                                                                                                              >  7:30274/1‑149 (MQ=38)         ggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGGTCGCCGGGGGATTTTCAGCGCCTGGGAGCTGTTCGCCCGGAGAGTTTCATCGCCAGGGATATAGAGGGACGCACGCGAGgcgcttcc                                                                                                                                          >  7:156950/1‑145 (MQ=255)         ggCGCAATTCGCGCTGTCGCGGGTAGGCTGTTGGCGGCAGGTGTTCTGGGTCTGGGTGGTGTTCGGCGGGTGTTTTGCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttcg                                                                                                                                          <  8:30274/149‑5 (MQ=16)         gcccgAAGTCTCGCTTTGGCGGGTCGGTCTTGGGCGGCAGGCTCGCCGCGCCTGGGAGGTGTTCGCCGGCTGTTGTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttc                                                                                                                                           <  2:260623/144‑4 (MQ=21)             gAATTGGGGCGTTGGGGGTTAGGTTTTTGGCGGGAGGTTTGCTGGTCCGGGTAGGTGTTGGCCGGTTGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcggg                                                                                                                                      <  2:92761/149‑1 (MQ=16)                                                                                                                                               ccgcGAAGCGCCGCGCGGGCGGCGCTCGATGTCACAGGCGGTGATAATCCTGCGGCTACGAGCTCAAAATTCCAACGCCGTCCACTCAAAATTCGAAGGCCGCGCCCTCTAGATTCCAGCGCCGCGGCCCGTGGAAACTGcatcaacgt    >  4:259393/1‑147 (MQ=255)                                                                                                                                               ccgcGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCCCCTCCCATCGAAAATCcaacaaca     >  7:279379/1‑148 (MQ=255)                                                                                                                                                  cgAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGACCACTCAAAATTCCAACGACGCACCCTCAAAATTCAAACTCCGACTCCCCTCGAAAATCAAACAACAAAg  >  8:140243/1‑148 (MQ=38)                                                                                                                                                   |                                                                                                                                                   GGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAG  >  NC_002947/4808033‑4808325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.