Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947195,6340CT39.6% 145.0 / 167.9 160T380T (ACC→ACT) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (47/49);  new base T (28/35);  total (76/84)
Fisher's exact test for biased strand distribution p-value = 6.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 170 total aligned reads displayed.

ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG  >  NC_002947/195489‑195780
                                                                                                                                                    |                                                                                                                                                  
aTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACaccaccacc                                                                                                                                                 >  4:229371/1‑149 (MQ=39)
     cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGAc                                                                                                                                            >  2:386789/1‑149 (MQ=39)
      agcccccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGAcc                                                                                                                                           >  4:306839/4‑149 (MQ=255)
         ccccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGAc                                                                                                                                            <  1:245465/145‑1 (MQ=39)
          cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGa                                                                                                                                       >  6:235497/1‑149 (MQ=39)
           ccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGAc                                                                                                                                      >  7:14232/1‑149 (MQ=39)
             ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACgg                                                                                                                                    >  7:297528/1‑149 (MQ=39)
                 aaTGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAg                                                                                                                                <  5:137009/149‑1 (MQ=12)
                 aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGGCTCGGTCGACACCACCACCGCGACCCTGACGGCGAg                                                                                                                                <  2:107060/149‑1 (MQ=37)
                       gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑AGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTc                                                                                                                          >  4:148916/1‑149 (MQ=37)
                       gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTc                                                                                                                          <  2:248458/149‑1 (MQ=17)
                        tCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCg                                                                                                                         <  4:302691/149‑1 (MQ=37)
                         cTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCgg                                                                                                                        >  2:294747/1‑149 (MQ=37)
                            caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc                                                                                                                               >  1:148826/1‑139 (MQ=37)
                            caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc                                                                                                                               <  2:148826/139‑1 (MQ=37)
                            caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCa                                                                                                                     >  8:41412/1‑149 (MQ=37)
                             aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCATAAGGCGG‑TAATATCGAGCAACTCACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCa                                                                                                                     <  1:134936/149‑1 (MQ=11)
                              acaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc                                                                                                                   <  4:207871/149‑1 (MQ=17)
                               caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGGATAATTTCGAGCAACTGACCCCGAATCCTACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGACCCCGTCGGACAcc                                                                                                                   >  1:286365/1‑149 (MQ=11)
                               caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAcc                                                                                                                   >  7:360328/1‑148 (MQ=17)
                                aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg                                                                                                                  >  6:120214/1‑148 (MQ=37)
                                 acGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa                                                                                                                <  4:244298/149‑1 (MQ=17)
                                   ggTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CTGGCGG‑CAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg                                                                                                              <  5:27246/149‑1 (MQ=21)
                                        gACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGGATAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc                                                                                                          >  1:66724/1‑149 (MQ=255)
                                        gACCGTCAGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg                                                                                                         >  4:28029/1‑149 (MQ=17)
                                         aCCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc                                                                                                          <  2:345700/147‑1 (MQ=37)
                                         aCCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCAG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg                                                                                                               >  3:246964/1‑142 (MQ=37)
                                             tCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATc                                                                                                    <  6:376174/149‑1 (MQ=39)
                                               atcGTCACCATCGATAACGCCA‑CAGGCGG‑TAATTTCGATCAACTGACCCCGAATCCGACCCCGGCTCATACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa                                                                                                   <  7:183127/146‑1 (MQ=255)
                                               aGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGt                                                                                                                           >  4:114979/1‑124 (MQ=17)
                                               aGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa                                                                                                   <  5:29990/148‑1 (MQ=17)
                                               aGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc                                                                                                  <  3:303642/149‑1 (MQ=17)
                                               aGCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGAGTGATccc                                                                                                  >  8:72254/1‑147 (MQ=12)
                                                gCGTCACCATCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAcc                                                                                                 >  5:344069/1‑148 (MQ=17)
                                                    cACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaca                                                                                             >  2:50164/1‑149 (MQ=39)
                                                        aTCGAGAACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt                                                                                         <  7:38037/149‑1 (MQ=17)
                                                           gagaACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa                                                                                       <  5:74304/148‑1 (MQ=17)
                                                            agaACGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAcc                                                                                     <  6:68415/149‑1 (MQ=17)
                                                              aaCGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt                                                                                                 >  5:401921/1‑135 (MQ=38)
                                                              aaCGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt                                                                                                 <  6:401921/135‑1 (MQ=38)
                                                              aaCGCCA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt                                                                                   >  5:46915/1‑149 (MQ=17)
                                                               aCGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt                                                                                   <  8:297528/148‑1 (MQ=39)
                                                                cGCCA‑CGGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 <  2:10959/149‑1 (MQ=21)
                                                                 gCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCt                                                                                   >  6:286711/1‑146 (MQ=39)
                                                                 gCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa                                                                                 <  1:161250/148‑1 (MQ=39)
                                                                  ccA‑CAGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTg                                                                                                                                        >  8:174659/1‑92 (MQ=16)
                                                                   cA‑CCGGGGG‑TAATTTCTAGCAACAGACCCCGAATGCGACCCCGGCTCTGACCACGATCAT‑CTACTCGGTGGACTCCACCACCGCGACCCTGACGGCGTGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGa                                                                                 <  8:106196/146‑1 (MQ=11)
                                                                      ccGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACcg                                                                                                                                                <  2:244533/81‑1 (MQ=40)
                                                                       aggcgg‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc                                                                           <  4:9469/148‑1 (MQ=11)
                                                                       aggcgg‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc                                                                           <  2:286365/148‑1 (MQ=18)
                                                                       aggcgg‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAcc                                                                           <  8:360328/148‑1 (MQ=18)
                                                                         gcgg‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCTGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCt                                                                         <  4:81006/149‑1 (MQ=255)
                                                                               aaTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGcc                                                                      >  8:18889/1‑147 (MQ=21)
                                                                                aTTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCa                                                                    <  6:141892/148‑1 (MQ=17)
                                                                                 tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGa                                                                  >  7:210514/1‑149 (MQ=21)
                                                                                   tCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGAc                                                                 <  3:184381/148‑1 (MQ=17)
                                                                                              aCCCCGAATCCGACCCCGGCTCAGACCACGATCAATCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGt                                                           >  1:59585/1‑144 (MQ=255)
                                                                                              aCCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCg                                                      <  5:235497/148‑1 (MQ=40)
                                                                                                cccGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa                                                   >  8:47899/1‑149 (MQ=12)
                                                                                                cccGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc                                                                            >  1:20339/1‑124 (MQ=18)
                                                                                                cccGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAc                                                                            <  2:20339/124‑1 (MQ=18)
                                                                                                cccGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGc                                                                       <  6:255777/129‑1 (MQ=25)
                                                                                                 ccGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGaa                                                  >  7:234139/1‑149 (MQ=255)
                                                                                                  cGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAAc                                                 <  3:170723/149‑1 (MQ=255)
                                                                                                      tCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGCCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa                                                   <  4:301968/143‑1 (MQ=255)
                                                                                                      tCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGATGCCACCACCGCGACCCTGACGCCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGa                                                   >  3:301968/1‑143 (MQ=255)
                                                                                                      tCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg                                                                                                         <  3:111552/89‑1 (MQ=14)
                                                                                                      tCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg                                                                                                         >  4:111552/1‑89 (MQ=14)
                                                                                                      tCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGt                                             >  1:13569/1‑149 (MQ=255)
                                                                                                        cGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTc                                            >  6:88195/1‑148 (MQ=255)
                                                                                                            cccGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg                                       <  3:28029/149‑1 (MQ=38)
                                                                                                            cccGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACg                                       >  4:321427/1‑149 (MQ=40)
                                                                                                              cGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTTATCACTTACACCGTCACCCAGAGCAACCCTGCCCAGACGCCGGTAAc                                                        <  1:17008/130‑1 (MQ=255)
                                                                                                              cGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAAc                                                        >  2:17008/1‑130 (MQ=35)
                                                                                                                  tCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa                                                                                       >  2:68596/1‑95 (MQ=33)
                                                                                                                    aGACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACg                               <  2:66724/149‑1 (MQ=38)
                                                                                                                    aGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCaaa                                 <  1:294747/147‑1 (MQ=39)
                                                                                                                     gACCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa                              <  7:18889/149‑1 (MQ=38)
                                                                                                                     gACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGa                              <  8:58921/149‑1 (MQ=39)
                                                                                                                      aCCACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGAt                             >  3:393048/1‑149 (MQ=255)
                                                                                                                        cACGATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTa                           <  8:299786/149‑1 (MQ=255)
                                                                                                                           gATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg                        >  3:348973/1‑149 (MQ=255)
                                                                                                                           gATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg                        <  6:46915/149‑1 (MQ=255)
                                                                                                                           gATCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCg                        >  4:314478/1‑149 (MQ=255)
                                                                                                                            aTCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGt                       <  8:234139/149‑1 (MQ=39)
                                                                                                                             tCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt                      <  5:88195/149‑1 (MQ=255)
                                                                                                                             tCAA‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGtt                      >  4:375852/1‑149 (MQ=255)
                                                                                                                                a‑CGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTg                     >  4:155700/1‑147 (MQ=255)
                                                                                                                                        ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCggg              <  3:321427/147‑1 (MQ=39)
                                                                                                                                        ggTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTAAACCGTGACCCTGAGCAACCCTGCCCAGACACCGGTAACCGTGAACCTGTCCAACGGCCAAACGAATACCTTTGAAGAGGGt             >  4:248897/1‑148 (MQ=14)
                                                                                                                                         gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaa           <  7:72254/149‑1 (MQ=255)
                                                                                                                                         gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTATCCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTa            >  5:239226/1‑148 (MQ=255)
                                                                                                                                            gACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTaaaa         <  5:18789/148‑1 (MQ=39)
                                                                                                                                                ccactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAg    <  3:314461/149‑1 (MQ=255)
                                                                                                                                                 cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAGCGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg   >  2:171884/1‑149 (MQ=255)
                                                                                                                                                 cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg   >  2:125256/1‑149 (MQ=255)
                                                                                                                                                 cactaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg   >  1:370262/1‑149 (MQ=255)
                                                                                                                                                 caccaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGCAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAgg   >  7:198062/1‑149 (MQ=255)
                                                                                                                                                    caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg                                                            >  3:136037/1‑89 (MQ=35)
                                                                                                                                                    caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCgg                                                            <  4:136037/89‑1 (MQ=35)
                                                                                                                                                    |                                                                                                                                                  
ATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCA‑CCGGCGG‑TAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAA‑CGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTAACCGTGAACCTGTCCAACGGCCAAACGATTACCGTTGAAGCGGGTAAAACCCAGGG  >  NC_002947/195489‑195780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑