| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,590 | 0 | T | C | 21.6% | 270.7 / 68.3 | 135 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (57/48); new base C (16/13); total (74/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 137 total aligned reads displayed.
CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197443‑197737 | ccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGAtt < 4:261888/149‑1 (MQ=37) tGACGGCGAGCACGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 3:33599/1‑149 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACATCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 4:20719/149‑1 (MQ=37) aCGGCGAGCCCGTCGGTCACCGAAGGCAGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 3:392048/149‑1 (MQ=37) ccGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGc < 5:1135/149‑1 (MQ=37) cGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCg < 5:36700/149‑1 (MQ=37) cGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAt > 6:78850/1‑149 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACGGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑Ac < 5:350116/138‑1 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑Ac > 6:350116/1‑138 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAt < 8:13197/148‑1 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑Ac > 4:23076/1‑132 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTc > 8:311107/1‑148 (MQ=37) cGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCt < 3:239653/149‑1 (MQ=37) gAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCCGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTa < 1:330576/149‑1 (MQ=37) ggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTAcaacaa > 2:52508/1‑149 (MQ=37) ggcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTAcaacaa > 2:112167/1‑149 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACaacaac > 5:301995/1‑149 (MQ=37) gcgTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACaacaac > 8:21448/1‑149 (MQ=37) tGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAt < 1:272980/131‑1 (MQ=37) gATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc > 1:27552/1‑115 (MQ=39) gATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTc < 2:27552/115‑1 (MQ=39) tCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTc < 6:301995/148‑1 (MQ=37) cACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGa > 3:88597/1‑149 (MQ=37) aCCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGAc > 6:402417/1‑149 (MQ=37) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGAcc < 1:149639/149‑2 (MQ=25) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACt > 3:291820/1‑149 (MQ=38) ccTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACt > 1:194950/1‑149 (MQ=38) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGAccg > 4:302879/1‑147 (MQ=25) cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTg > 2:120798/1‑149 (MQ=38) cacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGt > 4:88994/1‑147 (MQ=21) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCg > 6:197172/1‑113 (MQ=39) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCg < 5:197172/113‑1 (MQ=39) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTa > 2:294910/1‑127 (MQ=38) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGc < 1:52508/149‑1 (MQ=21) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGACTACAACAACGGTTAGACTGTAAGc > 2:363820/1‑148 (MQ=255) gTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGt < 5:85438/149‑1 (MQ=39) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 7:81233/103‑1 (MQ=40) ccTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCa > 1:189816/1‑149 (MQ=37) gAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 6:281238/1‑148 (MQ=37) gAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 7:31530/1‑148 (MQ=17) gCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 8:140170/1‑146 (MQ=37) aaTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACACCGGCGAAT‑GACGACTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGaa > 7:344351/1‑149 (MQ=255) cTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCa < 5:404969/88‑1 (MQ=38) tGCCCAGACGCCGGTAACCGTGACCCTGTCAAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca > 4:41964/1‑149 (MQ=37) gCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCca > 4:139835/1‑148 (MQ=17) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca > 1:196196/1‑147 (MQ=37) cccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCcaca < 3:139835/149‑1 (MQ=17) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGCTTCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 1:323412/149‑1 (MQ=11) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc < 8:31530/149‑1 (MQ=17) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca < 6:274936/143‑1 (MQ=37) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCca > 5:274936/1‑143 (MQ=37) gCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCAGCAAACCCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGt > 1:99935/1‑148 (MQ=11) cGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGGAAt > 4:59460/1‑149 (MQ=11) gtgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt > 5:200733/4‑148 (MQ=255) tgaCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 6:61935/147‑1 (MQ=255) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACTACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 3:88994/149‑1 (MQ=14) tAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 8:5732/149‑1 (MQ=14) aCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAG‑ACCCCGGCGAAT‑GACGTCGACAACAACGGTTCGACTGTCAGCGTCACAATCGAGAACGCCACAGGCGGTAATTTc > 7:140574/1‑147 (MQ=11) aCCGTGACCCTGTCCAACGGCCAAACCATTTCCGTTTAACGCGGCAACTACCATGGCATCGGCGATTTACAG‑ACCCCGGCGATTACACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 1:120798/149‑1 (MQ=11) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCg < 2:196196/148‑1 (MQ=34) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 7:142712/149‑1 (MQ=16) cGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGc < 8:255857/149‑1 (MQ=12) tGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 8:276337/149‑1 (MQ=12) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 3:74231/149‑1 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 6:253505/149‑1 (MQ=32) gACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc > 1:64610/1‑149 (MQ=32) aCCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 3:226381/148‑1 (MQ=12) aCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 4:291820/148‑1 (MQ=32) aCCCTGTCCAACGGCCAAACCATTACCATTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 1:399147/148‑1 (MQ=17) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGCAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 4:101744/1‑149 (MQ=255) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCCCCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 7:50753/1‑149 (MQ=255) ccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 7:44303/1‑149 (MQ=12) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa > 2:399552/1‑149 (MQ=32) tGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 4:199600/139‑1 (MQ=12) tGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 3:199600/1‑139 (MQ=12) cAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGa > 5:177472/1‑149 (MQ=12) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 3:41492/147‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc > 4:41492/1‑147 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGACAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCg > 4:210838/1‑148 (MQ=17) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:132097/1‑149 (MQ=32) aCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc > 5:128980/1‑149 (MQ=12) ccAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa < 3:185252/149‑1 (MQ=255) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 6:354118/1‑108 (MQ=32) cGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGa > 5:276544/1‑149 (MQ=37) gTTGAAGCCGGCAAAACCCAGGGCAGCGTCGCCTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCCACTGTCAGCGTCACCATCGAGAACGCCACACGCGGTAATTTCGAGCAACAGACCCCGCACCCGCCCCCGGCTCAgcc > 4:236282/1‑147 (MQ=11) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAcc < 6:200733/149‑1 (MQ=12) aaGCCGTCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCAc < 5:359761/148‑1 (MQ=255) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCAc > 6:8528/1‑148 (MQ=37) aGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGa > 1:225356/1‑149 (MQ=37) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACg < 6:128980/148‑1 (MQ=12) gCAAAACCCAGGGCAGCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac > 6:296548/1‑147 (MQ=2) aaaaCCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGa > 7:79927/4‑149 (MQ=37) ccAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa < 2:202700/103‑1 (MQ=32) ccAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCCGCTCAGACCACGATCACCGACTCgg > 5:79028/1‑149 (MQ=255) cgggCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCATCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 8:344351/148‑1 (MQ=255) aGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 7:21448/149‑1 (MQ=39) gCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTc > 7:375962/1‑120 (MQ=12) gCGTCGACTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTc < 8:375962/120‑1 (MQ=12) gTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGAcacca > 5:312587/1‑148 (MQ=39) aTTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGCCCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCactact > 8:106112/1‑149 (MQ=255) | CCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAG‑ACCCCGGCGAAT‑GACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACT > NC_002947/197443‑197737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |