| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,821,395 | Δ1 bp | 100% | intergenic (‑64/‑327) | PP_2474 ← / → PP_2475 | glutathione S‑transferase family protein/TetR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,821,395 | 0 | G | . | 85.7% | 65.3 / 3.1 | 21 | intergenic (‑64/‑327) | PP_2474/PP_2475 | glutathione S‑transferase family protein/TetR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base . (14/4); total (16/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
TTTCATATGGTTGGCCTATTTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCAGGGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGTCTCTATCCAGCGGCTTTCCTTCTGG > NC_002947/2821250‑2821535 | tttGATATGGTTGGCCAAATTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATTGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCAgggg < 4:48304/149‑1 (MQ=255) atatGGTTGGCCTATTTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCAgggggggg < 4:313712/149‑1 (MQ=255) atGGTTGGCCTATTTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCAggggggggg > 3:142572/1‑148 (MQ=255) gCCTATTTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTTTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAAcc > 3:92169/1‑149 (MQ=255) tcCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCaa > 2:288883/1‑148 (MQ=255) ccACAGAATACGAACCGACCTCGATTCATTTAGATGGGGGAGTTTTATCAGCGTTATTCCGCCTTGTACTGTATCGTGGGAGGGAACGGGTGCTTTGTATGAGGGTTCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATc < 4:89036/149‑1 (MQ=255) cctactACCAAACGCCATCGTATCATTTATTTGCTGGAGTTTTTTCATCGTTATATCGCCTTGTAAGTGTTCGTGGGAGGGAATGTGTGCTTTGTATGAGGGATCTCTGC‑CGGGGGTGGGCAGCAACCGGCGATCAAAATTTTATCTGt < 4:92169/144‑1 (MQ=255) cataaTACGAAACCACCTATAATCATTTAGATGTTGGACTTTAATCATCGTTTTTCCGCGTTGTAAGTTATCGTGGGAGGGACGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGt < 4:142572/146‑1 (MQ=255) aGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTACGCGACCAGTCTa > 6:94641/1‑149 (MQ=255) atcGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATg < 6:246870/149‑1 (MQ=255) atcGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATg > 5:246870/1‑149 (MQ=255) tcGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGTGATCTCGGCA‑GTGGGGGTGCAGCAACCGTCGATCAAAATTTTATATGTCAATAAGCGACCAGTCGACTGGCATGGAAAGCTGAGTGCTGAGATGc > 7:257061/1‑149 (MQ=255) attaCGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑‑GGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCtt > 2:110583/1‑147 (MQ=255) taCGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAg > 2:122208/1‑149 (MQ=255) gCCTTGTAAGTTTTCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCTCTTAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGCTGC‑CCTTTTgggt > 2:123875/1‑147 (MQ=255) ttGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTccc > 3:109173/1‑149 (MQ=255) ttGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTcc > 7:42611/1‑148 (MQ=255) gaAGGTGTGCTTTGTATGAGGGATCTCGGCAGGGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGtc > 1:231791/1‑148 (MQ=255) aaGGGGTGCTTTGTATCAGCGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGTctct < 8:42611/149‑1 (MQ=255) tgtgCTTTGTATGAGGGATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGTCTCTATc > 4:267923/1‑148 (MQ=255) aGGGATCTCGGCAGGGGGGGGGGCACCAACCGGCGATGAATATTTTATCTGACACTAAGCGACCAGTCAAATGGCAAGGCAAGCTGAGTGCGGCGATGC‑CGTTTAGGTAGCCTCCGGTTCCCCTGAGGGCTCTATCCAGCGGCTTTCCt > 6:303406/1‑149 (MQ=255) aGGGATCTCGGCA‑‑GGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGTCTCTATCCAGCGGCTTTCCTTc > 6:220567/1‑149 (MQ=255) ggATCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTAAAAGCGGCGAAACACATTAAGTTTCCAGCCGGATCAACTGAGGTAGATATCCAGCGGCTTTCATTc > 1:106556/1‑149 (MQ=255) aTCTCGGCA‑GGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGATCAGTGCGGCGATGC‑CCTTTAGGTTACCTCCGGATCCACTGAGGTCTCTATCCAGCGGCTTTCCTTCTgg > 5:79518/1‑149 (MQ=255) | TTTCATATGGTTGGCCTATTTCTTCCAGTAGCCACAGAATACGAAACGACCTAGAATCATTTAGATGGTGGAGTTTTATCATCGTTATTACGCCTTGTAAGTTATCGTGGGAGGGAAGGTGTGCTTTGTATGAGGGATCTCGGCAGGGGGGGGGGCAGCAACCGGCGATCAAAATTTTATCTGTCACTAAGCGACCAGTCTACTGGCATGGCAAGCTGAGTGCGGCGATGC‑CCTTTAGGTTCCCTCCGGATCCACTGAGGTCTCTATCCAGCGGCTTTCCTTCTGG > NC_002947/2821250‑2821535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |