Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,089,040 Δ1 bp 8.8% coding (113/510 nt) PP_2697 ← flavin reductase domain‑containing oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,089,0400A. 8.8% 170.8 / 10.7 57coding (113/510 nt)PP_2697flavin reductase domain‑containing oxidoreductase
Reads supporting (aligned to +/- strand):  ref base A (28/24);  new base . (3/2);  total (31/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGC  >  NC_002947/3088893‑3089186
                                                                                                                                                   |                                                                                                                                                   
ttGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGaa                                                                                                                                                    <  8:269616/149‑1 (MQ=255)
           gACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCt                                                                                                                                        >  5:251374/1‑149 (MQ=255)
                 cTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAGCCGATCGGCttcacc                                                                                                                                   <  2:325955/147‑6 (MQ=255)
                    aCCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAGCCGATCGGCTTCACCtgcca                                                                                                                               <  8:77889/149‑5 (MQ=255)
                        gACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCgtggtg                                                                                                                           >  5:55876/1‑149 (MQ=255)
                            ggATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGAt                                                                                                                       <  1:245997/149‑1 (MQ=255)
                                 ttGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAAt                                                                                                                  >  8:303431/1‑149 (MQ=255)
                                 ttGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAAt                                                                                                                  <  3:53022/149‑1 (MQ=255)
                                  tGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAAt                                                                                                                  >  5:102183/1‑148 (MQ=255)
                                       gTGAAGCGGCAAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGt                                                                                                            <  3:8665/149‑1 (MQ=255)
                                               gCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCg                                                                                                     >  3:300531/1‑148 (MQ=255)
                                               gCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCg                                                                                                     >  3:305213/1‑148 (MQ=255)
                                                 cAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGAt                                                                                                  <  6:55876/149‑1 (MQ=255)
                                                     cTGGCGGATTTTCGGTTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTTGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt                                                                                              <  5:99144/149‑1 (MQ=255)
                                                        gCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTa                                                                                             <  2:75936/147‑1 (MQ=255)
                                                        gCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGt                                                                                           <  2:201291/149‑1 (MQ=255)
                                                                   ggTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGcc                                                                                <  6:102183/149‑1 (MQ=255)
                                                                    gTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCt                                                                               <  7:235241/149‑1 (MQ=255)
                                                                             cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg                                                                      <  4:300531/149‑1 (MQ=255)
                                                                             cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg                                                                      <  4:305213/149‑1 (MQ=255)
                                                                             cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg                                                                      >  8:177818/1‑149 (MQ=255)
                                                                             cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg                                                                      >  5:223592/1‑149 (MQ=255)
                                                                             cGAACTCGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGAACAACGACTGGCACGAGAAGACGAACGGCTAACCATCCTCCTCCGATGAAATCAACATGATCCCCGATGCGTAGTGCCCAAGTGCCTGGCGAAAAg                                                                      >  2:61406/1‑149 (MQ=255)
                                                                                    gACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATACCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACgg                                                               >  4:165287/1‑149 (MQ=255)
                                                                                       aTCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTc                                                            >  8:204259/1‑149 (MQ=255)
                                                                                         cacaCTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGAAGCGTAGTGCACGAGTGCCTGGCGAAAAGTCGACGGCTCGa                                                          >  2:96035/1‑149 (MQ=255)
                                                                                          acacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGaaaa                                                                       <  7:39270/135‑1 (MQ=255)
                                                                                          acacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGaaaa                                                                       >  8:39270/1‑135 (MQ=255)
                                                                                           cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATc                                                                                                                 <  7:207816/92‑1 (MQ=255)
                                                                                           cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATc                                                                                                                 >  8:207816/1‑92 (MQ=255)
                                                                                           cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATc                                                        <  7:204259/149‑1 (MQ=255)
                                                                                           cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATc                                                        >  4:285571/1‑149 (MQ=255)
                                                                                              tGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGATCGATCGcc                                                     >  7:116982/1‑149 (MQ=255)
                                                                                                 aTGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTa                                                  >  8:146179/1‑149 (MQ=255)
                                                                                                     cacCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTg                                               >  2:236639/1‑148 (MQ=255)
                                                                                                      acCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTgg                                              >  1:66351/1‑148 (MQ=255)
                                                                                                        cAGCCGCGGGCACATCGATACGCTGTAGAACCACTGGCAGGTGAAGCCGATCGGCTCACCTACGTCGTGCGATGTAATCACCGTCATGCCGGATGCGTAGTGCCCTACTGCCTGGCGAAAAGTCGACCGCTCGATCGCCGTACTCGaaa                                           >  6:193424/1‑149 (MQ=255)
                                                                                                             gcggGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAAc                                      <  2:270539/149‑1 (MQ=255)
                                                                                                             gcggGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATACCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAAc                                      <  3:165287/149‑1 (MQ=255)
                                                                                                                ggCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATg                                   <  7:177818/149‑1 (MQ=255)
                                                                                                                  cTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGt                                 <  1:236639/149‑1 (MQ=255)
                                                                                                                   tCATCGATACGCTGTTGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATgg                                  >  3:80464/1‑147 (MQ=255)
                                                                                                                   tCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCg                                                    <  6:149634/129‑1 (MQ=255)
                                                                                                                   tCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCg                                                    >  5:149634/1‑129 (MQ=255)
                                                                                                                     aTCGATACGCTGTAGAAGGACTGGCAGGTGAAGCCGATCGGCTCCCGTTCGTGGTGCGATGTGATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCGGGCGAAAAGTCGACGGCGCGATCGCCGTACTGGCAGGCACCATGGGAgg                              >  6:227352/1‑149 (MQ=255)
                                                                                                                     aTCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAgg                              >  7:66581/1‑149 (MQ=255)
                                                                                                                             gCTGTAGATCGACTGTCAGGTGAAGGCGCTCGGCTCAGCTTCGTGGTGCGATGTAATCACCGTGTTGCCGGATGCGTAGTGCCCGAGTGGGTGGCGTAATGTCGACGGCTCGATCGCCGTACTGGAAAGCTACATGGTAGGTCCTGTgg                      <  5:193424/149‑1 (MQ=255)
                                                                                                                                 tAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTg                   >  5:141084/1‑148 (MQ=255)
                                                                                                                                   gAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcat                >  4:213812/1‑149 (MQ=255)
                                                                                                                                   gAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGca                 <  8:297632/148‑1 (MQ=255)
                                                                                                                                       gACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCTGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattcat            <  7:303431/149‑1 (MQ=255)
                                                                                                                                         cacgaaGGTGAGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattcatt           >  6:333390/6‑148 (MQ=255)
                                                                                                                                          acgaaGGTGAGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCAttt          >  4:320057/5‑148 (MQ=255)
                                                                                                                                            gaaGGTGAGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAg       >  4:312050/3‑149 (MQ=255)
                                                                                                                                            gCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAg       >  5:306584/1‑149 (MQ=255)
                                                                                                                                              aGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGc                                         >  7:303000/1‑113 (MQ=255)
                                                                                                                                              aGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGc                                         <  8:303000/113‑1 (MQ=255)
                                                                                                                                                 tGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAgcgtgc  <  1:61406/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
TTGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGCTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGC  >  NC_002947/3088893‑3089186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: