Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,089,040 | Δ1 bp | 8.8% | coding (113/510 nt) | PP_2697 ← | flavin reductase domain‑containing oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,089,040 | 0 | A | . | 8.8% | 170.8 / 10.7 | 57 | coding (113/510 nt) | PP_2697 | flavin reductase domain‑containing oxidoreductase |
Reads supporting (aligned to +/- strand): ref base A (28/24); new base . (3/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGC > NC_002947/3088893‑3089186 | ttGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGaa < 8:269616/149‑1 (MQ=255) gACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑t > 5:251374/1‑149 (MQ=255) cTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTG‑AGCCGATCGGC‑ttcacc < 2:325955/147‑6 (MQ=255) aCCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTG‑AGCCGATCGGCTTCACCtgcca < 8:77889/149‑5 (MQ=255) gACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCgtggtg > 5:55876/1‑149 (MQ=255) ggATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGAt < 1:245997/149‑1 (MQ=255) ttGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAAt > 8:303431/1‑149 (MQ=255) ttGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAAt < 3:53022/149‑1 (MQ=255) tGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAAt > 5:102183/1‑148 (MQ=255) gTGAAGCGGCAAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGt < 3:8665/149‑1 (MQ=255) gCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCg > 3:300531/1‑148 (MQ=255) gCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCg > 3:305213/1‑148 (MQ=255) cAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGAt < 6:55876/149‑1 (MQ=255) cTGGCGGATTTTCGGTTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTTGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt < 5:99144/149‑1 (MQ=255) gCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTa < 2:75936/147‑1 (MQ=255) gCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGt < 2:201291/149‑1 (MQ=255) ggTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGcc < 6:102183/149‑1 (MQ=255) gTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCt < 7:235241/149‑1 (MQ=255) cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg < 4:300531/149‑1 (MQ=255) cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg < 4:305213/149‑1 (MQ=255) cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg > 8:177818/1‑149 (MQ=255) cGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg > 5:223592/1‑149 (MQ=255) cGAACTCGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGAACAACGACTGGCACGAGAAGACGAACGGC‑TAACCATCCTCCTCCGATGAAATCAACATGATCCCCGATGCGTAGTGCCCAAGTGCCTGGCGAAAAg > 2:61406/1‑149 (MQ=255) gACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATACCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACgg > 4:165287/1‑149 (MQ=255) aTCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTc > 8:204259/1‑149 (MQ=255) cacaCTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGAAGCGTAGTGCACGAGTGCCTGGCGAAAAGTCGACGGCTCGa > 2:96035/1‑149 (MQ=255) acacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGaaaa < 7:39270/135‑1 (MQ=255) acacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGaaaa > 8:39270/1‑135 (MQ=255) cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATc < 7:207816/92‑1 (MQ=255) cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATc > 8:207816/1‑92 (MQ=255) cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATc < 7:204259/149‑1 (MQ=255) cacTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATc > 4:285571/1‑149 (MQ=255) tGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGATCGATCGcc > 7:116982/1‑149 (MQ=255) aTGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTa > 8:146179/1‑149 (MQ=255) cacCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTg > 2:236639/1‑148 (MQ=255) acCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTgg > 1:66351/1‑148 (MQ=255) cAGCCGCGGGCACATCGATACGCTGTAGAACCACTGGCAGGTGAAGCCGATCGGC‑TCACCTACGTCGTGCGATGTAATCACCGTCATGCCGGATGCGTAGTGCCCTACTGCCTGGCGAAAAGTCGACCGCTCGATCGCCGTACTCGaaa > 6:193424/1‑149 (MQ=255) gcggGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAAc < 2:270539/149‑1 (MQ=255) gcggGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATACCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAAc < 3:165287/149‑1 (MQ=255) ggCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATg < 7:177818/149‑1 (MQ=255) cTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGt < 1:236639/149‑1 (MQ=255) tCATCGATACGCTGTTGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATgg > 3:80464/1‑147 (MQ=255) tCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCg < 6:149634/129‑1 (MQ=255) tCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCg > 5:149634/1‑129 (MQ=255) aTCGATACGCTGTAGAAGGACTGGCAGGTGAAGCCGATCGGC‑TCCCGTTCGTGGTGCGATGTGATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCGGGCGAAAAGTCGACGGCGCGATCGCCGTACTGGCAGGCACCATGGGAgg > 6:227352/1‑149 (MQ=255) aTCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAgg > 7:66581/1‑149 (MQ=255) gCTGTAGATCGACTGTCAGGTGAAGGCGCTCGGC‑TCAGCTTCGTGGTGCGATGTAATCACCGTGTTGCCGGATGCGTAGTGCCCGAGTGGGTGGCGTAATGTCGACGGCTCGATCGCCGTACTGGAAAGCTACATGGTAGGTCCTGTgg < 5:193424/149‑1 (MQ=255) tAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTg > 5:141084/1‑148 (MQ=255) gAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcat > 4:213812/1‑149 (MQ=255) gAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGca < 8:297632/148‑1 (MQ=255) gACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCTGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattcat < 7:303431/149‑1 (MQ=255) cacgaaGGTG‑AGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattcatt > 6:333390/6‑148 (MQ=255) acgaaGGTG‑AGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCAttt > 4:320057/5‑148 (MQ=255) gaaGGTG‑AGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAg > 4:312050/3‑149 (MQ=255) gCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAg > 5:306584/1‑149 (MQ=255) aGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGc > 7:303000/1‑113 (MQ=255) aGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGc < 8:303000/113‑1 (MQ=255) tGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAgcgtgc < 1:61406/149‑1 (MQ=255) | TTGGAAATGCCGACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGC > NC_002947/3088893‑3089186 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |