New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	401307 =	21 (0.410)	9 (0.180)	6/248	NT	19.6%	coding (893/1059 nt)	PP_0334	transposase
	?	NC_002947	401378 =	54 (1.100)					coding (964/1059 nt)	PP_0334	transposase

CCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/401459‑401307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCC  >  NC_002947/401378‑401514                                                                                                                                                                                                                                                                                                      CCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCT                                                                                                                                                <  5:220082/149‑1   GCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCTATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGG                                                                                                                                              <  8:7833/149‑1   GCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGG                                                                                                                                              <  2:146251/149‑1    CCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGC                                                                                                                                             <  2:218440/149‑1    CCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGC                                                                                                                                             <  8:124378/149‑1                                GTAAACCTGATCGCTCTGTAACTGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGC                                                                                                                                             >  4:74639/1‑121                                GTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGC                                                                                                                                             <  3:74639/121‑1                                                                                              TCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGA                                                    <  8:251429/149‑1                                                                                              TCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA                                                                                                       <  8:63132/97‑1                                                                                              TCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGA                                                                                                       >  7:63132/1‑97                                                                                                 CCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCTAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCT                                               >  7:147006/1‑149                                                                                                 CCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCT                                               >  2:122328/1‑149                                                                                                   GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCT                                             >  7:890/1‑149                                                                                                   GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCTGATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCT                                             >  7:170616/1‑149                                                                                                                                        GGCGGCGATCA‑TCTGGCTGATCGGAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTC        <  8:890/149‑1                                                                                                                                              GATCA‑TCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCC  <  1:122328/149‑1                                                                                                                                                          TAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACC   <  1:68662/138‑1                                                                                                                                                          TAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACC   >  2:68662/1‑137                                                                                                                                                                                                                                                                                                      CCGCCTCCGGTTTTTCGTTCGGTTTGCGTTGGTAAACCTGATCGCTCTGTAACAGGGCCCAGATAATCCGCAGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCA‑TCTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/401459‑401307 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAG‑CCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCC  >  NC_002947/401378‑401514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.