| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1296784 = | NA (NA) | 7 (0.140) | 5/246 | NT | NA | intergenic (‑537/‑29) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
| ? | NC_002947 | 1296822 = | NA (NA) | coding (10/1329 nt) | PP_1133 | transposase | |||||
GAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1296938‑1296784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGG > NC_002947/1296822‑1296969 GAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG > 1:313732/1‑149 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGG < 8:101495/149‑1 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 7:285127/148‑1 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 2:111272/148‑1 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 8:288989/148‑1 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 4:245230/148‑1 AACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 2:60209/148‑1 actACTGGACGGTATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC < 1:115536/146‑1 GACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC > 7:75174/1‑149 ACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG > 4:3504/1‑149 CTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC < 8:31377/149‑1 CTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC > 4:58596/1‑149 GACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG > 5:65906/1‑145 GACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG < 6:65906/145‑1 CGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG < 4:270752/108‑1 CGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGATGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG > 3:270752/1‑108 TTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTC > 2:181718/1‑148 TTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCC < 2:105075/145‑1 TTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCC > 1:105075/1‑145 TTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGAGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTAGGTGGTCGAGATCATTTCGTTGAGGTCGATCCCCGGCACGAAAATCCCGTC > 4:210595/1‑148 GCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAG > 6:165369/1‑149 GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGA > 5:105962/1‑104 GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGA < 6:105962/104‑1 GGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 6:14821/1‑148 GGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 5:70100/1‑148 GGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCAGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 1:98241/1‑148 GCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAA < 7:34027/149‑1 GCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 3:232165/1‑147 CGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAG < 6:296372/149‑1 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGA < 4:295710/149‑1 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGA < 7:165945/149‑1 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 8:10146/1‑145 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 2:158739/1‑145 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 2:159891/1‑145 GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTC > 4:108532/1‑145 CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGAT < 5:335870/149‑1 CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGAT < 7:27013/149‑1 CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGAT < 5:45991/149‑1 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATG > 4:92035/1‑149 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATG > 1:44506/1‑149 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGAT < 7:159264/148‑1 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGAT > 8:159264/1‑148 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTC < 6:223323/119‑1 GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTC > 5:223323/1‑119 CAAGCCTTCCAATCAACGCTTTACCGTCTTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGATAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGT < 8:123039/108‑1 CAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGG < 7:136684/149‑1 CAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGG > 8:706/1‑149 GAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1296938‑1296784‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGG > NC_002947/1296822‑1296969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |