New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1445921 =60 (1.160)4 (0.080) 3/252 NT 6.7% coding (19/2178 nt) PP_1264 fusaric acid resistance protein
?NC_002947 1445958 = 54 (1.080)coding (56/2178 nt) PP_1264 fusaric acid resistance protein

GCGGTTGCGGCAGCTCCAGGCGCATGGCCAACCACAAGGTAATGAACGCGGCGGCCAGCACCTTGAAGATGTACACCCAGGTCACGCCGTCGGTGCGTGCCCAGGCAAAGAAGCCCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1446071‑1445921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTGGAGCTGCCGCAACC  >  NC_002947/1445958‑1446069
                                                                                                                                                                                                                                                                       
GCGGTTGCGGCAGCTCCAGGCGCATGGCCAACCACAAGGTAATGAACGCGGCGGCCAGCACCTTGAAGATGTACACCCAGGTCACGCCGTCGGTGCGTGCCCAGGCAAAGAAGCCACGGCGCCATTCCAGGCTTTGCAGCCAGCGCACG                                                                                                                    >  3:77358/1‑149
                                                                                                      AGGCAAAGAAGCCCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGGGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTG                >  2:327841/1‑147
                                                                                                                  CCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGGGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTGGAGCTGCCGCAACC  >  2:44285/1‑149
                                                                                                                  CCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGGGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTGG               <  3:198832/136‑1
                                                                                                                  CCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGGGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTGG               >  4:198832/1‑136
                                                                                                                                                                                                                                                                       
GCGGTTGCGGCAGCTCCAGGCGCATGGCCAACCACAAGGTAATGAACGCGGCGGCCAGCACCTTGAAGATGTACACCCAGGTCACGCCGTCGGTGCGTGCCCAGGCAAAGAAGCCCCGGCGCCATTCCAGGCTTTGCAGCCAGCGCACGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1446071‑1445921
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggGCTTCTTTGCCTGGGCACGCACCGACGGCGTGACCTGGGTGTACATCTTCAAGGTGCTGGCCGCCGCGTTCATTACCTTGTGGTTGGCCATGCGCCTGGAGCTGCCGCAACC  >  NC_002947/1445958‑1446069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.