| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2363970 = | 94 (1.820) | 6 (0.120) | 6/244 | NT | 6.6% | intergenic (‑94/+239) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase |
| ? | NC_002947 | 2364009 = | 81 (1.670) | intergenic (‑133/+200) | PP_2076/lysA‑I | hypothetical protein/diaminopimelate decarboxylase | |||||
AAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2364122‑2363970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcaacCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC > NC_002947/2364009‑2364156 AAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGT < 2:186328/149‑1AAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAAC < 2:116677/147‑1 AGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTC < 4:27936/149‑1 CTGGGTGAGATCGGGCCGCTTTGCGGCCCTGGCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAA < 4:203606/149‑1 GGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTGTTCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAA < 1:256026/147‑1 TGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGT > 8:214597/1‑141 TGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGT < 7:214597/141‑1 GGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACC > 7:254668/1‑148 GTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGA < 8:288567/78‑1 GTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGA > 7:288567/1‑78 atcACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGA < 2:132574/115‑1 TTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGA > 1:132574/1‑118 AAGGCGACGAAAAGCCTGCCAACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGT < 8:254668/149‑1 ACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGG > 1:239694/1‑149 ACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAG < 5:203014/148‑1 ACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGT < 4:4400/128‑1 ACGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGT > 3:4400/1‑128 CGTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGT < 7:207847/149‑1 GTCAACCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGTCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGT > 4:285623/1‑148 TCAACCCACCTGCCTCTGGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGA < 6:76858/149‑1 CCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC < 7:67596/149‑1 CCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC < 3:27936/149‑1 AAGCTGGGTGAGATCGGGCCGCTTTGCGGCCCTGTCTCGATGCGGCACCGTATTAAAAAAAGCGACCAGGGTGGCTCTGCACCCGATAGCCCTG‑GCGCAACGAGAGGCAGGTGGGTTGACGTGAAAGGCGACGAAAAGCCTGCCAACGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2364122‑2363970‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcaacCCACCTGCCTCTCGTTGCGCCAGGGCTATCGGGTGCAGAGCCACCCTGGTCGCTTTTTTTAATACGGTGCCGCATCGAGACAGGGCCGCAAAGCGGCCCGATCTCACCCAGCTTGAGCGTGCCGGGGGATGAAGCTGGAGGTGAAGGC > NC_002947/2364009‑2364156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |