New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2373098 =	96 (1.860)	5 (0.100)	4/248	NT	5.3%	intergenic (‑120/‑72)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase
	?	NC_002947	2373130 =	87 (1.770)					intergenic (‑152/‑40)	PP_2081/ppsA	phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase

GCCCAGGGATGCGTTCTTGCCCCCCACATGCTCCACATCATGGACGCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2373250‑2373098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGCCG  >  NC_002947/2373130‑2373272                                                                                                                                                                                                                                                                                                          GCCCAGGGATGCGTTCTTGCCCCCCACATGCTCCACATCATGGACGCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCG                                                                                                                                                     <  8:230370/149‑1  CCCAGGGATGCGTTCTTGCCCCCCACATGCTCCACATCATGGACGCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGG                                                                                                                                                    >  2:248589/1‑149   CCAGGGATGCGTTCTTGCCCCCCACATGCTCCACATCATGGACGCCGAGATTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGG                                                                                                                                                   >  5:135992/1‑149     AGGGATGCGTTCTTGCCGGCCTCATGCTCCACATCATTGACGCCGAGCTTATCGAGGGAAACTACGTACTGTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCG                                                                                                                                                 <  6:205386/149‑1                                                                                                                    AAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGG                                            <  5:10222/139‑1                                                                                                                    AAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGG                                            >  6:10222/1‑139                                                                                                                      AAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGG                                            <  6:290785/137‑1                                                                                                                       AGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGC                                                                     <  7:83853/111‑1                                                                                                                       AGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGC                                                                     >  8:83853/1‑111                                                                                                                                                    CGGGAGCCTTTTGAGCTTTTACAACACAGTTAGTGGAGAGATCACGTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGCCG  >  6:267470/1‑149                                                                                                                                                                                                                                                                                                          GCCCAGGGATGCGTTCTTGCCCCCCACATGCTCCACATCATGGACGCCGAGCTTATCGAGGGAAACTACGTACTCTACCAAGGTGATCTCTCCACTAACTGTGTTGGAAAAGCTCAAAAGGCGCCCGCCTGTCTTCTATGACTTGGCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2373250‑2373098 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggcgCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGCCG  >  NC_002947/2373130‑2373272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.