| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5226225 = | 59 (1.140) | 5 (0.100) | 4/250 | NT | 8.5% | coding (463/876 nt) | PP_4605 | AraC family transcriptional regulator |
| ? | NC_002947 | 5226276 = | 51 (1.030) | coding (514/876 nt) | PP_4605 | AraC family transcriptional regulator | |||||
GTGATGGGCTGGTCCAGGTGTGCCTCGAGGTAGTCGACCAACTGCCGGCGCAGGTTTGGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5226376‑5226225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTT > NC_002947/5226276‑5226422 GTGATGGGCTGGTCCAGGTGTGCCTCGAGGTAGTCGACCAACTGCCGGCGCAGGTTTGGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGC < 2:150439/149‑1GTGATGGGCTGGTCCAGGTGTGCCTCGAGGTAGTCGACCAACTGCCGGCGCAGGTTTGGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGC < 2:155438/149‑1 GATGGGCTGGTCCAGGTGTGCCTCGAGGTAGTCGACCAACTGCCGGCGCAGGTTTGGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGC > 5:193435/1‑147 CCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGA < 5:272798/133‑1 CCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGA > 6:272798/1‑133 CTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCAT > 5:125133/1‑149 CTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGAC < 1:73375/120‑1 CTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGAC > 2:73375/1‑120 CCAGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACT > 2:234414/1‑149 AGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTT > 5:267583/1‑149 AGGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTT < 7:71602/149‑1 GTGATGGGCTGGTCCAGGTGTGCCTCGAGGTAGTCGACCAACTGCCGGCGCAGGTTTGGCGCCAGCCCGCCTTTCAGGCGCAGGCCTTGGCGCAACCCGACCTGGCTGAGCAGCGCATGGTCCACGATCTCGTGCGCCAGGCTGCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5226376‑5226225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGTCGGGTTGCGCCAAGGCCTGCGCCTGAAAGGCGGGCTGGCGCCAAACCTGCGCCGGCAGTTGGTCGACTACCTCGAGGCACACCTGGACCAGCCCATCACCCTGGACGAGCTGGCGCTGCGCTGCAATCTGTCCGAATACCACTTT > NC_002947/5226276‑5226422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |