New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 937856	48 (0.930)	4 (0.080)	4/248	NT	7.9%	coding (7766/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 937891	48 (0.970)					coding (7731/18933 nt)	PP_0806	surface adhesion protein

GGCGTTGCCGCTCGGGTCGGTCTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATCGATCAGACGGATGT  >  NC_002947/937714‑938000                                                                                                                                               |                                                                                                                                                 ggCGTTGCCGCTCGGGTCGGTCTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCAc                                                                                                                                            >  8:67062/1‑149 (MQ=255)       gCCGCTCGGGTCGGTCTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCtt                                                                                                                                      >  4:141652/1‑149 (MQ=255)               ggtcggtcTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGa                                                                                                                              <  4:176262/149‑1 (MQ=255)                gtcggtcTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGAc                                                                                                                             >  8:241824/1‑149 (MQ=255)                   ggtcTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCAATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGc                                                                                                                          >  2:145335/1‑149 (MQ=255)                     tcTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGcc                                                                                                                         >  4:14113/1‑148 (MQ=255)                     tcTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGcc                                                                                                                         >  3:177185/1‑148 (MQ=255)                         tACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAg                                                                                                                     <  3:14113/148‑1 (MQ=255)                                   aGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGccgtc                                                                                                          <  7:125457‑M2/149‑6 (MQ=255)                                     gCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCgg                                                                                                        <  4:76528/149‑1 (MQ=255)                                      cGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGgc                                                                                                       <  3:141652/149‑1 (MQ=255)                                       gTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGcctgaccttgggcggtcgcggcgaagccggtgctaccgtcgagg                                                                                                      >  5:127597‑M1/1‑105 (MQ=255)                                         cgaCCCGGCTGCGCTGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGcc                                                                                                    >  3:132332/3‑149 (MQ=255)                                          cACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCcg                                                                                                   >  3:285633/1‑149 (MQ=255)                                            cccGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCgg                                                                                                                                         >  4:187062/1‑109 (MQ=255)                                            cccGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCgg                                                                                                                                         <  3:187062/109‑1 (MQ=255)                                             ccGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCcgacg                                                                                                >  3:82311/1‑149 (MQ=255)                                              cGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCcgacga                                                                                               >  2:314782/1‑149 (MQ=255)                                                    cgcagcCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGcctgaccttgggcggtcgcggcgaagccggtgctaccgtcgaggtgcgcgatgccaa                                                                                         <  6:127597‑M1/149‑58 (MQ=255)                                                          cGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGa                                                                                   <  1:314782/149‑1 (MQ=255)                                                                  ggtcgaTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACggca                                                                           <  4:82311/149‑1 (MQ=255)                                                                   gtcgaTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACggcag                                                                          >  6:224293/1‑149 (MQ=255)                                                                      gaTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGCCTACggcaggca                                                                       >  7:272350/1‑149 (MQ=255)                                                                      gaTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACggcaggca                                                                       >  8:105481/1‑149 (MQ=255)                                                                       aTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCAc                                                                      <  1:14806/149‑1 (MQ=255)                                                                       aTCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCAc                                                                      <  1:145335/149‑1 (MQ=255)                                                                          aGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGt                                                                   <  8:125457/149‑1 (MQ=255)                                                                          aGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGt                                                                   <  7:241824/149‑1 (MQ=255)                                                                            gAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGctgctg                                                                                    <  4:178282/130‑1 (MQ=255)                                                                            gAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGctgctg                                                                                    >  3:178282/1‑130 (MQ=255)                                                                                    cGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCggg                                                         >  4:187590/1‑149 (MQ=255)                                                                                    cGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCggg                                                         <  7:105481/149‑1 (MQ=255)                                                                                             tCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGcctgaccttgggcggtcgcggcgaagccggtgctaccgtcgag                                                                                                       >  2:159362‑M1/1‑51 (MQ=255)                                                                                             tCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGcctgaccttgggcggtcgcggcgaagccggtgctaccgtcgag                                                                                                       <  1:159362‑M1/94‑44 (MQ=255)                                                                                              cACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAAtt                                               >  2:49979/1‑149 (MQ=255)                                                                                                       ggTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGATTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGt                                       >  7:180142/1‑148 (MQ=255)                                                                                                           ccGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAag                                   <  4:132332/148‑1 (MQ=255)                                                                                                           ccGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAag                                   <  2:103605/148‑1 (MQ=255)                                                                                                           ccGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCACAAGGTCAGGCCGTCGGCGCCGGCGACACAGCTGCTTACTACCGCAGGCACGCTGAAGTGCGGGCCCACGAAGTGCAGGGGAGAagc                                  >  4:225563/1‑148 (MQ=255)                                                                                                                         aTTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCcggcgg                    <  1:49979/149‑1 (MQ=255)                                                                                                                          ttGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGccgtcgaggtgcgcgatgccaatggcacgctggtcggtaccggcacagtgaccgcgaacggtactttcctgatcgacctcgacccggctgcg                   <  6:127597‑M2/149‑93 (MQ=255)                                                                                                                          ttGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAAtt                                               >  3:304878/1‑121 (MQ=255)                                                                                                                          ttGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAAtt                                               <  4:304878/121‑1 (MQ=255)                                                                                                                            ggCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCa                  <  4:177185/148‑1 (MQ=255)                                                                                                                             gCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATc                >  5:88447/1‑149 (MQ=255)                                                                                                                             gCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATc                <  5:224293/149‑1 (MQ=255)                                                                                                                             gCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATc                <  4:285633/149‑1 (MQ=255)                                                                                                                              cATCGCGCACGTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTTCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAAATGCAGGGGTGAAGAGATATTGCCGGCGGCATCg               <  7:107384/149‑1 (MQ=255)                                                                                                                              cATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATc                >  6:265692/1‑148 (MQ=255)                                                                                                                                tCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCTCGGTGATGTCCGGGGCCTCGAATTGCAGGGGGGAagag                                 <  3:162010/129‑1 (MQ=255)                                                                                                                                  gcgcACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATCGATc            <  7:67062/148‑1 (MQ=255)                                                                                                                                   cgcACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATCGAt             >  1:295807/1‑146 (MQ=255)                                                                                                                                    gcACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATAATGCCGGCGGCATCGATCAGa         <  4:126057/149‑1 (MQ=255)                                                                                                                                       ccTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGccgtcgaggtgcgcgatgccaatggcacgctggtcggtaccggcacagtgaccgcgaacggtactttcctgatcgacctcgacccggctgcgctgccgggtgaac      >  5:127597‑M2/1‑44 (MQ=255)                                                                                                                                        cTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGccgtcgaggtgcgcgatgccaatggcacgctggtcggtaccggcacagtga                                                            >  2:159362‑M2/1‑43 (MQ=255)                                                                                                                                        cTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGccgtcgaggtgcgcgatgccaatggcacgctggtcggtaccggcacagtga                                                            <  1:159362‑M2/94‑52 (MQ=255)                                                                                                                                        cTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATCGATCAGACGGa     >  5:61031/1‑149 (MQ=255)                                                                                                                                           gACGGcctgaccttgggcggtcgcggcgaagccggtgctaccgtcgaggtgcgcgatgccaatggcacgctggtcggtaccggcacagtgaccgcgaacggtactttcctgatcgacctcgacccggctgcgctgccgggtgaacgcct  <  7:125457‑M1/149‑145 (MQ=255)                                                                                                                                               |                                                                                                                                                 GGCGTTGCCGCTCGGGTCGGTCTGTACCAGGCTCAGGCGTTCACCCGGCAGCGCAGCCGGGTCGAGGTCGATCAGGAAAGTACCGTTCGCGGTCACTGTGCCGGTACCGACCAGCGTGCCATTGGCATCGCGCACCTCGACGGTAGCACCGGCTTCGCCGCGACCGCCCAAGGTCAGGCCGTCGGCGCCGACGACAATGCTGCTGACTACGGCAGGCACGGTGATGTCCGGGGCCTCGAATTGCAGGGGTGAAGAGATATTGCCGGCGGCATCGATCAGACGGATGT  >  NC_002947/937714‑938000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.