New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2032810 =	NA (NA)	3 (0.060)	3/248	NT	16.4%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032835 =	16 (0.310)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase

CTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACG  >  NC_002947/2032665‑2032874                                                                                                                                                  |                                                                 cTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCg                                                               >  5:22828/1‑149 (MQ=34)  ttGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCgg                                                              >  4:56280/1‑149 (MQ=34)     cGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGTGATCATCAACGCCTCCGAAGGCCGTCCGGtg                                                            <  1:34096/148‑1 (MQ=21)       gCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGtgctg                                                         >  2:169610/1‑149 (MQ=34)         cTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGca                                                       >  8:191123/1‑149 (MQ=34)                  gACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCtt                                              >  7:19589/1‑149 (MQ=34)                  gACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCt                                               <  8:37001/148‑1 (MQ=34)                       ctCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCtt                                              <  6:212221/144‑1 (MQ=34)                       ctCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCtt                                              >  5:212221/1‑144 (MQ=34)                          aaaaaaCCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCGTTGCGCCGGc                                      >  5:119662/1‑149 (MQ=17)                          aaaaaaCCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCg                                        <  8:47630/147‑1 (MQ=32)                                ccTGATCACCGAGCAAAGCCGCAATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAg                                <  2:141741/149‑1 (MQ=17)                                 cTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAgg                               >  5:64881/1‑149 (MQ=32)                                 cTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAgg                               <  4:248197/149‑1 (MQ=32)                                   gATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGt                              >  4:7098/1‑148 (MQ=32)                                   gATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGt                              <  3:7098/148‑1 (MQ=32)                                   gATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGt                              >  2:189572/1‑148 (MQ=32)                                   gATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTACACACCGCCTTGCGCCGGCCTGTAGGt                              >  8:190517/1‑148 (MQ=17)                                    aTCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGt                              <  3:56280/147‑1 (MQ=32)                                    aTCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGt                              <  8:19589/147‑1 (MQ=32)                                                    gcgATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAAc            <  6:22828/149‑1 (MQ=32)                                                       aTCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCt                                               <  7:300649/111‑1 (MQ=32)                                                       aTCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCt                                               >  8:300649/1‑111 (MQ=32)                                                          tgctgGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGt       >  7:11399/1‑148 (MQ=32)                                                            ctgGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGa     <  1:189572/148‑1 (MQ=32)                                                               gTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAAc   <  6:64881/147‑1 (MQ=32)                                                               gTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACg  >  5:6064/1‑148 (MQ=32)                                                                    ccTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGa                            <  4:191390/117‑1 (MQ=11)                                                                    ccTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGa                            >  3:191390/1‑117 (MQ=11)                                                                                                                                                  |                                                                 CTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCTGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACG  >  NC_002947/2032665‑2032874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.