| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2537768 = | 48 (0.930) | 6 (0.120) | 5/242 | NT | 11.5% | coding (1271/2916 nt) | mrpAB | K(+)/H(+) antiporter subunit A/B |
| ? | NC_002947 | 2537815 = | 48 (1.000) | coding (1224/2916 nt) | mrpAB | K(+)/H(+) antiporter subunit A/B | |||||
GGTGGGGAAGATGCCCACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCGGCACGCCGGCCATCGACG > NC_002947/2537623‑2537909 | ggtgggGAAGATGCCCACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCa > 6:95686/1‑149 (MQ=255) gtgggGAAGATGCCCACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCAc > 3:53112/1‑149 (MQ=255) gcctgatccgcctggtgccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGc < 3:236700‑M1/2‑1 (MQ=255) ctgatccgcctggtgccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCAc > 5:40039‑M1/145‑149 (MQ=255) atccgcctggtgccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCt < 7:50955‑M1/8‑1 (MQ=255) gATGCCCACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAgg > 7:79642/1‑149 (MQ=255) ccACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCg > 2:45169/1‑149 (MQ=255) gtgccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGcc < 7:274389‑M1/3‑1 (MQ=255) gtgccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGcc > 8:274389‑M1/133‑135 (MQ=255) gccctacaccgcgaccctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggacgagGCCACGCTGAAGGTGCCgg < 7:26522‑M1/19‑1 (MQ=255) aGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTGTCGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAggg > 1:90828/1‑149 (MQ=255) aGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGt < 4:53112/149‑1 (MQ=255) gCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTgg < 2:120270/149‑1 (MQ=255) gCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTgg < 1:45169/149‑1 (MQ=255) gAGCACCAGCAGCTCCACCGGAGCACGCATGCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTa > 1:27866/1‑149 (MQ=255) ctggccatggtcgccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTAc < 5:312663‑M1/35‑1 (MQ=255) aCCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCgg < 1:32334/149‑1 (MQ=255) cagcagCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCa > 4:108775/1‑149 (MQ=255) gcagcTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCCATTAGGACACAACGGAGAGTAAAACACAGGGGATACGCCACGCTGAAGGTGCAGCCCAGGGTGGCGATTAcacc > 1:267138/1‑144 (MQ=255) cagcTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCg < 2:27866/149‑1 (MQ=255) ccACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCACGGTGGCGATTACCGGCAGCGTGGcc > 8:50955/1‑149 (MQ=255) gccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTgg > 8:26522‑M1/103‑148 (MQ=255) gccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTgg > 4:171228‑M1/103‑148 (MQ=255) gccagcgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGc > 4:214062‑M1/103‑149 (MQ=255) aCCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTc < 7:133169/149‑1 (MQ=255) ccGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAg > 8:295492/1‑110 (MQ=255) cGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGa < 3:108775/149‑1 (MQ=255) cgcgtcgatggccggcgtgccgctgatgaacggcttcctgtcgaaggaaatgttcttcgccgaaacggttttcatcagttccaccgcctgggtcgagGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGa > 6:312663‑M1/98‑149 (MQ=255) aGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGAccc < 2:90828/149‑1 (MQ=255) gCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCa < 8:79642/149‑1 (MQ=255) cGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGGGGCGATTACCGGCAGCGTGGCCTCGACCCAGGc < 7:193211/149‑1 (MQ=255) aTCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGt < 2:165840/149‑1 (MQ=255) gTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACTCATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACtg < 1:269972/149‑1 (MQ=255) cTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGaaaa > 2:165635/1‑149 (MQ=255) tCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAAc > 8:17206/1‑149 (MQ=255) tG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGt < 1:165635/149‑1 (MQ=255) gggTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCg < 5:95686/149‑1 (MQ=255) gTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGc > 8:83795/1‑149 (MQ=255) gCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCgaagaa > 2:142403/1‑148 (MQ=255) ggCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTc < 2:267138/148‑1 (MQ=255) gCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGTTGGCGATTTCCGGCAGCGTGGCCTAGACCCAGGCGGTGGAACTGATGAAAACCGTTACGTCGAAGAACATTTCCTTCGACAGGAAg > 6:251959/1‑149 (MQ=255) cc‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTc < 7:129020/119‑1 (MQ=255) cc‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTc > 8:129020/1‑119 (MQ=255) c‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACAttt < 6:169808/132‑1 (MQ=255) c‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACAttt > 5:169808/1‑132 (MQ=255) c‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCg > 5:86190/1‑149 (MQ=255) c‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCg > 4:48536/1‑149 (MQ=255) acaTC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAg > 5:328857/1‑149 (MQ=255) aTC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGt < 3:139282/87‑1 (MQ=255) aTC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGt > 4:139282/1‑87 (MQ=255) aTC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCg > 4:313671/1‑149 (MQ=255) aTC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCg > 5:294392/1‑149 (MQ=255) gACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCGGCa > 5:87118/1‑149 (MQ=255) aCGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTc < 2:79167/123‑1 (MQ=255) aCGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGCCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTc > 1:79167/1‑123 (MQ=255) gTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCGGCACGcc < 1:142403/149‑1 (MQ=255) aaCGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCtt > 2:131509/1‑115 (MQ=255) aaCGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCtt < 1:131509/115‑1 (MQ=255) aCGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAg < 8:130831/124‑1 (MQ=255) aCGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAg > 7:130831/1‑124 (MQ=255) ggCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCGGCACGCCGGCCATCGAcg > 5:57157/1‑149 (MQ=255) | GGTGGGGAAGATGCCCACTACCAGGCACGTGAGCACCAGCAGCTCCACCGGAGCACGCATCCAGCGTGGCGGCTCGTG‑CGGGGTATGGGGCAGGTCCTGGGCTGTCGGCCC‑GAAGAACACATC‑GACGGTAAAACGCAGGGCATACGCCACGCTGAAGGTGCCGGCCAGGGTGGCGATTACCGGCAGCGTGGCCTCGACCCAGGCGGTGGAACTGATGAAAACCGTTTCGGCGAAGAACATTTCCTTCGACAGGAAGCCGTTCATCAGCGGCACGCCGGCCATCGACG > NC_002947/2537623‑2537909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |