New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3588095	34 (0.660)	3 (0.060)	3/250	NT	9.7%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588165	23 (0.460)					coding (12/1272 nt)	benE‑II	benzoate transport protein

GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAG  >  NC_002947/3587948‑3588243                                                                                                                                                    |                                                                                                                                                     ggggAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGTCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGt                                                                                                                                                     >  5:163093/1‑149 (MQ=255)          gggtTCTTCGAAGGTCCGGATGGTCGGCATTCAGAGCTGAAGTTCGACTTCCAGTTGGAGAAGGCGCAGTTCGGTGCCTATGAGCAGAGCATCTGGAGGCCGGGATCTTTTCAGTAGGCCTGATCCACCTAGTTGGATGTTTCGAggtc                                                                                                                                            <  6:119527/147‑3 (MQ=255)             ttCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATg                                                                                                                                         <  4:48487/149‑1 (MQ=255)             ttCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATg                                                                                                                                         <  8:93582/149‑1 (MQ=255)                  cgAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCg                                                                                                                                     >  2:162541/1‑148 (MQ=255)                       ggCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTccaa                                                                                                                               <  3:154453/149‑3 (MQ=255)                            gATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCcacacgg                                                                                                                          >  2:117114/1‑146 (MQ=255)                                 tCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGTCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGc                                                                                                                     <  2:101737/149‑1 (MQ=255)                                      aTGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCCAGCCCCCTACCCCACGTGAATCCagtg                                                                                                                >  8:203240/1‑149 (MQ=255)                                           gAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTc                                                                                                           <  1:162541/149‑1 (MQ=255)                                                 aaGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCgttgt                                                                                                      <  3:310268/148‑1 (MQ=255)                                                  aGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGttgttg                                                                                                    <  8:134258/149‑1 (MQ=255)                                                    ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGttgttg                                                                                                    >  3:54309/1‑147 (MQ=255)                                                        aCTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCgg                                                                                              <  2:328816/149‑1 (MQ=255)                                                        aCTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCgg                                                                                              <  2:17586/149‑1 (MQ=255)                                                          ttCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCggg                                                                                             >  2:199152/1‑148 (MQ=255)                                                            ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcat                                                                                          >  3:210277‑M1/1‑89 (MQ=255)                                                            ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggc                                                                                            <  2:82806‑M1/147‑59 (MQ=255)                                                             cAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcat                                                                                          <  4:210277‑M1/148‑61 (MQ=255)                                                             cAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATg                                                                                         <  8:114385/149‑1 (MQ=255)                                                                ttGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGccc                                                                                      >  1:38811/1‑149 (MQ=255)                                                                       aGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGc                                                                               >  2:38811‑M2/1‑148 (MQ=255)                                                                         gCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcag                                                                             <  3:98920‑M2/149‑4 (MQ=255)                                                                           ccAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGcagc                                                                            <  4:34473‑M2/148‑5 (MQ=255)                                                                                                   cagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCca                                                    >  4:227701/1‑148 (MQ=255)                                                                                                        ggcggcggcTAGCTTTGCTGGAGGCCTGATCCACCGTGTGGGCTGTTGCGCGGGCATGCCCGCTCCCACCGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAgg                                              <  7:203240/149‑1 (MQ=255)                                                                                                        ggcggcCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                            <  8:181746/71‑1 (MQ=255)                                                                                                        ggcggcCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAg                                                                                                                            >  7:181746/1‑71 (MQ=255)                                                                                                           ggcCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCACGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCcg                                                                                     >  7:136835/1‑107 (MQ=255)                                                                                                           ggcCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCACGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCcg                                                                                     <  8:136835/107‑1 (MQ=255)                                                                                                                   gCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGc                                   <  4:54309/149‑1 (MQ=255)                                                                                                                        gCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGc                                                                                                                     <  6:295898/62‑1 (MQ=255)                                                                                                                                 cTGATCCACCGTGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCtt                     <  3:220076/149‑1 (MQ=255)                                                                                                                                 cTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGccc                                                        <  8:201170/114‑1 (MQ=255)                                                                                                                                 cTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGccc                                                        >  7:201170/1‑114 (MQ=255)                                                                                                                                  tGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCtt                     >  8:291625/1‑148 (MQ=255)                                                                                                                                     tCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt                  <  4:98920/148‑1 (MQ=255)                                                                                                                                       cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGa                >  5:238544/1‑148 (MQ=255)                                                                                                                                       cACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGa                >  5:242961/1‑148 (MQ=255)                                                                                                                                        aCCGAGTGGGCTGTTTCGCGGGCATTCCCCCTACCACAGGTGAAGCCTGTGCAGTGGTTGTTTGAGCGGGCATTCCCGCGAAGCAGCCAACACCCAAAACAGAGCCCGCCACAAAGGCCGGCCCCTGCCGTGCGAGAAGCTTCATGaa               >  2:270123/1‑148 (MQ=255)                                                                                                                                            aGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGc          <  3:34473/149‑1 (MQ=255)                                                                                                                                                 gctgcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgg      <  4:34473‑M1/148‑145 (MQ=255)                                                                                                                                                  ctgcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggc    <  3:98920‑M1/149‑147 (MQ=255)                                                                                                                                                   tGTTTCGCGGGCATGCCCGCTCCCACAGGTGCAGCCAGTGGCGTCGTTGTTGGGGCGGGCATGCCCCCGAAGCAGCCAACACCCAAACAACCGCCCGCCCCAAACGCCCGCCGCGGCCCTGCGACCAGCGTAAAGAGAAAGCtcatca    >  8:288344/1‑148 (MQ=255)                                                                                                                                                    gcttcgcgggcatgcccgctccaacaacgactgcacaggcttcacctgtgggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcct  >  2:38811‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGGGAGGTGGTGTTCGTCGAAGGGCCGGATGGTCGGCATGCCGAGCTGAAGTTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATGCCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAG  >  NC_002947/3587948‑3588243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.