New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4259919 =	46 (0.890)	4 (0.080)	4/252	NT	7.4%	coding (394/1059 nt)	PP_3733	hydrolase
	?	NC_002947	4260007 =	55 (1.100)					coding (306/1059 nt)	PP_3733	hydrolase

GCCCTGCTCACCATGCAGCACCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCC  >  NC_002947/4259773‑4260061                                                                                                                                                   |                                                                                                                                                 gCCCTGCTCACCATGCAGCACCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTgg                                                                                                                                                 <  2:75640/148‑1 (MQ=255)    cTGCTCACCATGCAGCACCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGc                                                                                                                                               <  1:265862/147‑1 (MQ=255)    cTGCTCACCATGCAGCACCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGc                                                                                                                                               >  2:265862/1‑147 (MQ=255)            cATCCAGCACCAAGGGAAGAACGCAGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACAATCTCTAGCTGTTCGATACCGCCCTGGACCTGCAACACCCAGTCAAAGATCCATGCGCCAAACGACAGGCCCTCCACGCCg                                                                                                                                     >  8:276658/1‑149 (MQ=255)                   caCCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCTACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGc                                                                                                                              <  1:274126/149‑1 (MQ=255)                      cAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACAGGCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGa                                                                                                                           >  1:271753/1‑149 (MQ=255)                        aGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑c                                                                                                                        >  4:223214/1‑149 (MQ=255)                           gAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑cccc                                                                                                                     >  2:28397/1‑149 (MQ=255)                             caccgccaacctcaaggacgcccagggccgtgactggggcgcccagtggacactgttccgctcggccttgcgccccggtccggagaccagcggctggaacagcccgaacctgtggatgGGGCCTGCACGCCGGCCTGGCCGAT‑cccccc                                                                                                                   <  5:100287‑M1/31‑1 (MQ=255)                                      tgCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCa                                                                                                           <  8:37198/148‑1 (MQ=255)                                      tgCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCa                                                                                                           <  6:291341/148‑1 (MQ=255)                                         aaCTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAggg                                                                                                        <  7:276658/148‑1 (MQ=255)                                              cAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTc                                                                                                    <  3:223214/147‑1 (MQ=255)                                              acgcccagggccgtgactggggcgcccagtggacactgttccgctcggccttgcgccccggtccggagaccagcggctggaacagcccgaacctgtggatgGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTcag                                                                                                  <  6:193268‑M1/48‑1 (MQ=255)                                                  tCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCagcagc                                                                                              >  4:318036/1‑149 (MQ=255)                                                      aGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGa                                                                                          >  4:275769/1‑149 (MQ=255)                                                         gAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCTTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCt                                                                                                                                             <  1:242110/96‑1 (MQ=255)                                                         gAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCt                                                                                                                                             >  2:242110/1‑96 (MQ=255)                                                               cATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCgcgc                                                                                                             >  2:326462/1‑121 (MQ=255)                                                               cATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCgcgc                                                                                                             <  1:326462/121‑1 (MQ=255)                                                               cATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCAccc                                                                                 >  4:314572/1‑149 (MQ=255)                                                                 tCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCgg                                                                               >  6:139626/1‑149 (MQ=255)                                                                        ttGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑t                                                                        >  6:18829/1‑148 (MQ=255)                                                                          gCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCa                                                                      <  8:173951/148‑1 (MQ=255)                                                                            gACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGtg                                                                   <  6:287590/149‑1 (MQ=255)                                                                            gACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGtg                                                                   <  5:18829/149‑1 (MQ=255)                                                                              ccATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCCAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGtgct                                                                 >  2:238981/1‑149 (MQ=255)                                                                               cATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGtgctg                                                                >  7:295284/1‑149 (MQ=255)                                                                               cATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGtgctg                                                                >  2:39369/1‑149 (MQ=255)                                                                                       cgctcggccttgcgccccggtccggagaccagcggctggaacagcccgaacctgtggatgGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGcccc                                                        >  6:100287‑M1/61‑149 (MQ=255)                                                                                         tGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑‑CCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGgcgc                                                                            <  5:214163/127‑1 (MQ=255)                                                                                         tGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑‑CCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGgcgc                                                                            >  6:214163/1‑127 (MQ=255)                                                                                         ctcggccttgcgccccggtccggagaccagcggctggaacagcccgaacctgtggatgGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCAt                                                      >  5:193268‑M1/59‑149 (MQ=255)                                                                                           ttCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATcc                                                    >  4:4132/1‑149 (MQ=255)                                                                                              gATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCca                                                   >  1:211889/1‑147 (MQ=255)                                                                                                     ccctggccctgCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCgg                                          >  2:153640/1‑149 (MQ=255)                                                                                                      cctggccctgCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCggg                                         <  2:209279/149‑1 (MQ=255)                                                                                                          gccctgCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTACGGGCTGt                                     >  4:133626/1‑149 (MQ=255)                                                                                                          gccccgCAACACCCACTCATTGCTCCAGGCGCCAAACGGCTCCGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTCTCAGCAGCCTGATGGCCACCCCGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGt                                     <  2:278188/149‑1 (MQ=255)                                                                                                             ctgCAACACCCAGTCATTGATCAATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGATCCCCCCCCCGCGCCAGGGTTTCAGCACCCGGATGGCCCCCCGGCGCGG‑GCAGTGCGGCATGCCCCAGCACCAGGTTCGGGCTGTTc                                   >  7:292402/1‑149 (MQ=255)                                                                                                                cAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCa                                 <  4:155747/147‑1 (MQ=255)                                                                                                                   cacCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGc                            >  7:138496/1‑149 (MQ=255)                                                                                                                      ccAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGGCTCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTg                          <  1:238981/149‑1 (MQ=255)                                                                                                                            aTTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCANAGGTTCGGGCTGTTCCAGCCGCTGGTCTcc                    <  1:28397/148‑1 (MQ=255)                                                                                                                            aTTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCg                   >  3:299780/1‑149 (MQ=255)                                                                                                                                aTCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGAcc               >  1:81543/1‑149 (MQ=255)                                                                                                                                aTCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGAcc               <  5:139626/149‑1 (MQ=255)                                                                                                                                 tCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCg              <  1:132070/149‑1 (MQ=255)                                                                                                                                      gcgcGACACGGCTGGGCCGGCCCGCCGGACTGGCCGCTCCCCCCCCCGCGCCTGGGTTTCCGCCGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCCTGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGgc          <  8:292402/149‑1 (MQ=255)                                                                                                                                         cgAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCaa      <  3:275769/149‑1 (MQ=255)                                                                                                                                           aaaCGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAgg    <  1:39369/149‑1 (MQ=255)                                                                                                                                           aaaCGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAgg    <  3:314572/149‑1 (MQ=255)                                                                                                                                             aCGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGcc  >  1:314310/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GCCCTGCTCACCATGCAGCACCAAGGGAAGATCGCTGTGCAACTGCAGGTCATAGCGAAAACCATCGCCACTTGCGACCATCTGTAGCTGTTCGATACCGCCCTGGCCCTGCAACACCCAGTCATTGATCCATGCGCGAAACGGCTGGGCCTGCACGCCGGCCTGGCCGAT‑CCCCCCCCGCGCCAGGGTTTCAGCAGCCTGATGGCCACCCGGCGCGG‑TCAGTGCTGCATGCCCCATCCACAGGTTCGGGCTGTTCCAGCCGCTGGTCTCCGGACCGGGGCGCAAGGCC  >  NC_002947/4259773‑4260061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.