New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4889595	20 (0.390)	4 (0.100)	3/206	NT	17.9%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889632	21 (0.510)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCAT  >  NC_002947/4889447‑4889741                                                                                                                                                      |                                                                                                                                                   gAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAA                                                                                                                                                    >  1:47852‑M1/1‑149 (MQ=255)     acCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACAcc                                                                                                                                                <  4:259064/149‑1 (MQ=255)                        ccAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACCCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATc                                                                                                                              <  2:111673/148‑1 (MQ=255)                                   tgggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTc                                                                                                                  <  2:330561/149‑1 (MQ=255)                                    gggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccgg                                                                                                                 <  6:217683‑M1/149‑36 (MQ=255)                                     ggCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccgg                                                                                                                 <  6:71413‑M1/148‑36 (MQ=255)                                             gTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGc                                                                                                                                             >  6:136914/1‑112 (MQ=255)                                             gTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGc                                                                                                                                             <  5:136914/112‑1 (MQ=255)                                               aCAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGTCGGTGCCATCCACCGAGTTGTCTGCttcgcggg                                                                                                       >  7:140857‑M2/1‑140 (MQ=255)                                                cAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggc                                                                                                      >  1:189426‑M2/1‑139 (MQ=255)                                                    ccGCTGCCCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagc                                                                                                  <  1:226975‑M1/148‑51 (MQ=255)                                                    ccGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagc                                                                                                  >  2:226975‑M1/1‑98 (MQ=255)                                                     cGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCTATCTGAGGAACAACTCGGGACCCTGTGGGAGCTGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCTCCGAGTTGTCTGCttcgggggcgagccc                                                                                                >  4:106783‑M2/1‑134 (MQ=255)                                                          accaccaccGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcc                                                                                           >  2:47852‑M2/1‑129 (MQ=255)                                                                      gCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctccc                                                                                          >  8:220880‑M2/1‑117 (MQ=255)                                                                      gCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctccc                                                                                          <  7:220880‑M2/138‑22 (MQ=255)                                                                        gggCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGt                                                                                                                                    <  1:31306/94‑1 (MQ=255)                                                                        gggCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGt                                                                                                                                    >  2:31306/1‑94 (MQ=255)                                                                         ggCCTGGGCTGCCTCAAACCCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCGCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAg                                                                            <  1:265964/149‑1 (MQ=255)                                                                            cTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgctt                                                                         >  4:40575/1‑149 (MQ=255)                                                                                       gAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGatat                                                              <  3:40575/149‑1 (MQ=255)                                                                                             ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAGAGCTTGCTTGAGATATCACAAt                                                        >  2:204512/1‑149 (MQ=255)                                                                                             ccACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCCC‑GAAAACCGGCAAAGCCGGTGCCAAACACCCACGTGTCTGCTTCGCGGGCCACCCCGCGCCCACAGGGGGCCAAACCTTGATTGAGATATCACAAt                                                        >  4:290938/1‑149 (MQ=37)                                                                                                      aaTCTGAGGAACAACTCGGGACCCTGTTGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCAATCCACCTAGTTGTCTGCTTCGCGGTCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag                                               <  3:290938/149‑1 (MQ=255)                                                                                                        tCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGGAACACCGGc                                                                                                                                             >  1:229023/1‑54 (MQ=37)                                                                                                        tCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGc                                                                                                                                             <  2:229023/53‑1 (MQ=255)                                                                                                                  aacTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGtt                                                                                                                     <  6:51608/67‑1 (MQ=255)                                                                                                                  aacTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGtt                                                                                                                     >  5:51608/1‑67 (MQ=255)                                                                                                                     tCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGc                                >  2:202101/1‑149 (MQ=255)                                                                                                                             cTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCCTCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCg                        >  2:219164/1‑149 (MQ=255)                                                                                                                                tgGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAGAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt                      <  1:204512/148‑1 (MQ=255)                                                                                                                                 gggAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgc                               <  7:220880‑M1/138‑118 (MQ=255)                                                                                                                                 gggAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgc                               >  8:220880‑M1/1‑21 (MQ=255)                                                                                                                                  ggAGCGGGCTCGCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggt                   >  2:47852‑M1/1‑20 (MQ=255)                                                                                                                                       gggCTCGCCCCC‑GAAgcagacaactcggaggatggcaccggctttgccggtgttcgcgggcgagccagctcccacagggtcccgagttgttcctcagatagcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcg              >  4:106783‑M1/1‑15 (MQ=255)                                                                                                                                         gCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcgg             >  2:226975‑M2/1‑50 (MQ=255)                                                                                                                                         gCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtgggcagcgg             <  1:226975‑M2/148‑99 (MQ=255)                                                                                                                                           tCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCAcc          >  8:138465/1‑149 (MQ=255)                                                                                                                                             gCCCGC‑GAAgcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttg         >  1:189426‑M1/1‑9 (MQ=255)                                                                                                                                              cccGC‑GAAgcagacaactcggtggatggcaccgactttgccggtgttcgcgggcgagcccgctcccacagggtcccgagttgttcctcagattgcgttgtgggttttcagccagcccaggcccgcttcggtggtggtcagcggcttgt        >  7:140857‑M1/1‑8 (MQ=255)                                                                                                                                                    gAACACCGGCAAAGCCGGTGCCATCTACCGAGTTGTCTGCTTCGCCGGCGAGCCCGCTCCCACAGGGGGCCCAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCCTCGGCACCGGcatcat  >  4:191787/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC‑GAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCAT  >  NC_002947/4889447‑4889741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.