New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5594119	26 (0.500)	3 (0.070)	3/204	NT	12.2%	intergenic (‑66/+79)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	= 5594156	23 (0.570)					intergenic (‑103/+42)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

AAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCT  >  NC_002947/5593976‑5594265                                                                                                                                                |                                                                                                                                                   aaaCAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCg                                                                                                                                               <  5:118541/149‑1 (MQ=255)   ccagaggcagtataggaaggagtacttaagccttcctgactaatggcacaatgatttctacgatttggttataactccaatcgcagtgaggaataaatttggggccctaatgccttcctgtgggagcgggcacGCCCGCGAACACCgg                                                                                                                                              >  5:254837‑M2/134‑148 (MQ=255)        tCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGc                                                                                                                                        <  7:229656/149‑1 (MQ=255)            gAGGACCGTAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGACTACTGGCTGGGTGATGTCATGGGCATTTCTGCAGGAGTGATTTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGt                                                                                                                                    <  7:292548/149‑1 (MQ=38)                 ccGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCAt                                                                                                                               <  4:181959/149‑1 (MQ=255)                  cGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATg                                                                                                                              <  3:68676/149‑1 (MQ=255)                    aaaaTGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGc                                                                                                                                             >  3:253614/1‑132 (MQ=255)                    aaaaTGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGGCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGc                                                                                                                                             <  4:253614/132‑1 (MQ=255)                               ctgGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGTCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgct                                                                                                                  <  1:74181/148‑1 (MQ=255)                               ctgGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCATTCCCGCGAAAACCCGCAAAGCCCGTGCCAAGCAACGCACtgctt                                                                                                                 >  7:122047/1‑149 (MQ=255)                                 ggATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgc                                                                                                               <  7:205208/149‑1 (MQ=255)                                  gATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGGGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgcttgc                                                                                                               <  1:221364/148‑1 (MQ=255)                                     cctgactaatggcacaatgatttctacgatttggttataactccaatcgcagtgaggaataaatttggggccctaatgccttcctgtgggagcgggcacGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTc                                                                                                            <  1:304541‑M2/49‑1 (MQ=255)                                        gATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAgcaagcactgcggtgcatggcaccggctttgccggtgttcgcgg                                                                                                        <  1:52045‑M1/149‑45 (MQ=255)                                        ctgactaatggcacaatgatttctacgatttggttataactccaatcgcagtgaggaataaatttggggccccgcgccccttgtgggagcgggcacGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCgg                                                                                                        <  5:77697‑M2/53‑1 (MQ=255)                                         actaatggcacaatgatttctacgatttggttataactccaatcgcagtgaggaataaatttggggccctaatgccttcctgtgggagcgggcacGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCgg                                                                                                        <  6:254837‑M2/53‑1 (MQ=255)                                                    gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGc                                                                                                                        >  6:282095/1‑121 (MQ=255)                                                    gggAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGc                                                                                                                        <  5:282095/121‑1 (MQ=255)                                                      gagagaACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctccc                                                                                          <  2:17769‑M2/149‑22 (MQ=255)                                                                           tcatggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGtt                                                                     <  5:261245/149‑1 (MQ=255)                                                                                gtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAgcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaa                                                                                                    <  5:63638‑M1/113‑49 (MQ=255)                                                                                gtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAAgcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaa                                                                                                    >  6:63638‑M1/1‑65 (MQ=255)                                                                                 tcatgTCCGCAGGAGTGATGTTAAGTGGCATACTCCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACt                                                               >  1:44183/1‑149 (MQ=255)                                                                                       ccGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCCGTTTAGACTTtgttg                                                         >  8:178563/1‑147 (MQ=255)                                                                                        cGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGt                                                        <  2:44183/149‑1 (MQ=255)                                                                                                 gATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTTGCCGCGCACACCGGCAAAGCCGGGGCCCATCCCCCCAGTGCTTGGTTGGCGGGGAAGCCCCCGCCCCCCGGGGTAGGTGGGGGGGGTTTGTCTTTTTTGTACAgctggg                                               >  8:288495/1‑148 (MQ=12)                                                                                                                    caccCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                   <  1:282784/110‑1 (MQ=255)                                                                                                                         tgtgGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgc                                                                                                                   <  4:264364/57‑1 (MQ=255)                                                                                                                         tgtgGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGtgc                                                                                                                   >  3:264364/1‑57 (MQ=255)                                                                                                                            gggAGCGGGCTTGCCCGCGAAgcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctc                    <  2:17769‑M1/149‑129 (MQ=255)                                                                                                                                  gggCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCAc              >  3:298947/1‑149 (MQ=255)                                                                                                                                    gCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGc            <  7:288495/149‑1 (MQ=255)                                                                                                                                      ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgac                                              >  6:63638‑M2/1‑48 (MQ=255)                                                                                                                                      ttGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgac                                              <  5:63638‑M2/113‑66 (MQ=255)                                                                                                                                        gCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGc        >  2:26162/1‑149 (MQ=255)                                                                                                                                         cccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGcc       >  1:227516/1‑149 (MQ=255)                                                                                                                                         cccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGcc       >  7:11412/1‑149 (MQ=255)                                                                                                                                         cccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGcc       >  2:327075/1‑149 (MQ=255)                                                                                                                                          ccGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCttcgcgggcaagcccgctcccacagggtggtgtatgccacttaacatcactcctgcggacatgaccatgacatcacccagccagttctctcccgaccatccaatc      <  1:52045‑M2/149‑106 (MQ=255)                                                                                                                                              gAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt  >  5:108862/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   AAACAGGTCGCGAGCACCGAAAATGCGCTGCTGGATGGGGATTGGATGGTCGGGAGAGAACTGGCTGGGTGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCT  >  NC_002947/5593976‑5594265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.