New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5611374 =	45 (0.870)	4 (0.080)	4/250	NT	8.1%	coding (368/1176 nt)	PP_4931	hypothetical protein
	?	NC_002947	5611414 =	48 (0.970)					coding (408/1176 nt)	PP_4931	hypothetical protein

CCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCT  >  NC_002947/5611229‑5611521                                                                                                                                                  |                                                                                                                                                    ccgcgccgcTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGcc                                                                                                                                                   <  6:133631/148‑1 (MQ=255) attaccttcacgcaagggttcgatgcgttcacctgccagcaaggactcgccggccagctcggccaggttggccagcaggctcgggacatcgaccaccagttccgccaggcggtacaccttgcccttgaacgcgcggtcctgcagtGCCg                                                                                                                                                  <  4:213894‑M1/4‑1 (MQ=255)        tcacgcaagggttcgatgcgttcacctgccagcaaggactcgccggccagctcggccaggttggccagcaggctcgggacatcgaccaccagttccgccaggcggtacaccttgcccttgaacgcgcggtcctgcagtGCCGGGTCGAc                                                                                                                                           <  6:286490‑M1/11‑1 (MQ=255)        gcTGGCGCGAGACCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGAc                                                                                                                                           <  5:38559/149‑1 (MQ=255)                    ccTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGt                                                                                                                               <  1:93760/149‑1 (MQ=255)                        ggCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGAc                                                                                                                            <  1:171013/148‑1 (MQ=255)                        ggCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGAc                                                                                                                            >  1:89677/1‑148 (MQ=255)                           cggcgacggcgaACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGt                                                                                                                        >  5:288156/1‑149 (MQ=255)                           cGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGt                                                                                                                        >  5:331356/1‑149 (MQ=255)                             gCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTg                                                                                                                      >  3:46186/1‑149 (MQ=255)                             gCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTg                                                                                                                      <  6:95814/149‑1 (MQ=255)                                 cGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCAc                                                                                                                  <  2:89677/149‑1 (MQ=255)                                    cGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCgg                                                                                                               >  2:137064/1‑149 (MQ=255)                                         tCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTg                                                                                                          >  6:180114/1‑149 (MQ=255)                                         tCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCATCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTg                                                                                                          >  4:74698/1‑149 (MQ=255)                                          acgactcgccggccagctcggccaggttggccagcaggctcgggacatcgaccaccagttccgccaggcggtacaccttgcccttgaacgcgcggtcctgcagtGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGc                                                                                                         >  5:286490‑M1/105‑149 (MQ=255)                                              cTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCAc                                                                                                                  >  5:194887/1‑136 (MQ=255)                                              cTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCAc                                                                                                                  <  6:194887/136‑1 (MQ=255)                                                     gTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACcgcgc                                                                                               <  4:68644/148‑1 (MQ=255)                                                      tACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCCCTGCAGGACCGCGCGt                                                                                             >  2:300820/1‑149 (MQ=255)                                                         ccGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGTACTGCAGGACCGCGCGTTc                                                                                           >  8:246254/1‑148 (MQ=255)                                                          cGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCaa                                                                                         <  4:248675/149‑1 (MQ=255)                                                                 tctcCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCCTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAg                                                                                  >  8:103296/1‑149 (MQ=255)                                                                   tcCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGgt                                                                                >  5:124546/1‑149 (MQ=255)                                                                     cGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAgg                                                                                 <  1:137064/146‑1 (MQ=255)                                                                           ccACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGGTGTACCGcc                                                                        >  1:125331/1‑149 (MQ=255)                                                                            cACTACCTTTGGTCGCCGGGCACCTTGGCCGGCAAACTCGCAAGCTTATTCGCCAGAAAGGCCGTGCGCGGCCGGGTCGACCATGTCAAGGGTGACCAGTTGCCACCGGCAATGCAGGACCGCGCTGTCAAGGTAAAGGTGTACCGCCt                                                                       >  4:49448/1‑149 (MQ=255)                                                                            cACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCt                                                                       >  6:106649/1‑149 (MQ=255)                                                                                 tcgggacatcgaccaccagttccgccaggcggtacaccttgcccttgaacgcgcggtcctgcagtGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCa                                                                                                        >  1:273183‑M1/66‑111 (MQ=255)                                                                                 tcgggacatcgaccaccagttccgccaggcggtacaccttgcccttgaacgcgcggtcctgcagtGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCa                                                                                                        <  2:273183‑M1/46‑1 (MQ=255)                                                                                   tgtgGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTAc                                                                            >  4:213562/1‑137 (MQ=255)                                                                                   tgtgGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTAc                                                                            <  3:213562/137‑1 (MQ=255)                                                                                       gTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACtgg                                                            <  4:46186/149‑1 (MQ=255)                                                                                       gTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACtgg                                                            >  6:193620/1‑149 (MQ=255)                                                                                        tCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACtggt                                                           <  6:288156/149‑1 (MQ=255)                                                                                               gCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGAt                                                    >  7:253610/1‑149 (MQ=255)                                                                                                 aCCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGt                                                  <  3:74698/149‑1 (MQ=255)                                                                                                  ccTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTc                                                 <  6:124546/149‑1 (MQ=255)                                                                                                         cGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGcc                                          >  7:255502/1‑149 (MQ=255)                                                                                                             aaCCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACtgg                                                            >  6:175707/1‑127 (MQ=255)                                                                                                             aaCCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACtgg                                                            <  5:175707/127‑1 (MQ=255)                                                                                                             aaCCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCctgct                                      >  3:236094/1‑149 (MQ=255)                                                                                                                   acaAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGc                                   >  5:237406/1‑146 (MQ=255)                                                                                                                   acaAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGCTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGc                                   <  6:237406/146‑1 (MQ=255)                                                                                                                     aaGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCaa                                                                                         >  5:192741/1‑90 (MQ=255)                                                                                                                     aaGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCaa                                                                                         <  6:192741/90‑1 (MQ=255)                                                                                                                     aaGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAAcc                              >  8:66739/1‑149 (MQ=255)                                                                                                                       gCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTg                            <  5:106649/149‑1 (MQ=255)                                                                                                                        cttcttCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTgg                           >  3:213894/1‑149 (MQ=255)                                                                                                                                  aGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGc                 <  5:330039/149‑1 (MQ=255)                                                                                                                                      aGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGc             <  7:103296/149‑1 (MQ=255)                                                                                                                                             gcgcGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCt      <  4:236094/149‑1 (MQ=255)                                                                                                                                                cgGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGTACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGc   <  7:246254/149‑1 (MQ=255)                                                                                                                                                cgGCCGGGTCGACCAGGTCAAGGGTGACCAGGTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGGCGAGGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGc   <  3:49448/149‑1 (MQ=255)                                                                                                                                                 ggCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCt  >  8:282231/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCGCGCCGCTGGCGCGAGGCCTTGGCCGGCAACGGCGAACTCGACCTCAGTCGTACCCGCCTGCTCTCCGATGCCCACTACCTGTGGTCGCCGGGCACCTTGGCCGGCAACCTCACAAGCTTCTTCGCCAGCAAGGCCGTGCGCGGCCGGGTCGACCAGGTCAAGGGTGACCAGTTGCCACCGGCACTGCAGGACCGCGCGTTCAAGGGCAAGGTGTACCGCCTGGCGGAACTGGTGGTCGATGTCCCGAGCCTGCTGGCCAACCTGGCCGAGCTGGCCGGCGAGTCCTTGCT  >  NC_002947/5611229‑5611521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.