New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698727 =	24 (0.460)	3 (0.070)	3/226	NT	11.6%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	25 (0.560)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

AGTGTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATT  >  NC_002947/5698581‑5698870                                                                                                                                                   |                                                                                                                                                 agacctcgccgggtgcgtaggtgaggctgagggtcttggaggctttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTc                                                                                                                                                <  1:76967‑M1/3‑1 (MQ=255)     tCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGGGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            <  7:59280/149‑1 (MQ=255)     tCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            <  1:80027/149‑1 (MQ=255)        ttCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            <  1:71957/146‑1 (MQ=255)        ttCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            >  2:71957/1‑146 (MQ=255)         ccgggtgcgtaggtgaggctgagggtcttggaggctttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCgg                                                                                                                                            >  2:22268‑M1/139‑145 (MQ=255)         ccgggtgcgtaggtgaggctgagggtcttggaggctttgtgcaggttgatggcggtaggcaggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCgg                                                                                                                                            <  1:22268‑M1/7‑1 (MQ=255)           aGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGc                                                                                                                                      <  7:190447/149‑1 (MQ=255)           aGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGc                                                                                                                                      >  8:230429/1‑149 (MQ=255)                     aCCTGGCCAGCACCCTTGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGc                                                                                                                            <  2:323451/149‑1 (MQ=255)                             aGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGcca                                                                                                                    <  7:289860/149‑1 (MQ=255)                                   cATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACaa                                                                                                              >  3:117613/1‑149 (MQ=255)                                    aTGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAAc                                                                                                             <  5:12983/149‑1 (MQ=255)                                       aCGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCt                                                                                                          <  4:117613/149‑1 (MQ=255)                                          aaGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTcgc                                                                                                                                              <  7:25873/110‑1 (MQ=255)                                          aaGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTcgc                                                                                                                                              >  8:25873/1‑110 (MQ=255)                                                 gATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCtgtg                                                                                                <  7:230429/149‑1 (MQ=255)                                                      aGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGAt                                                                                           <  6:162513/149‑1 (MQ=255)                                                                ggcgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCgggg                                                                                 <  5:321130/149‑1 (MQ=255)                                                                  cgTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGgggc                                                                               <  1:276484/149‑1 (MQ=255)                                                                    caggcgggccatgggcagaatctctcgggagctgatgaagcacagcttccagcttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGgggc‑gg                                                                            >  2:254055‑M1/80‑149 (MQ=255)                                                                         gAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            <  8:208359/81‑1 (MQ=255)                                                                         gAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCgg                                                                                                                                            >  7:208359/1‑81 (MQ=255)                                                                         gAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGTGCAAAACCGCTCAAGAAACCCCCAAACCAACACCTGGGCCTGTGGTTGTACGGGCGGGGGG‑GGGCTTg                                                                       >  8:162740/1‑149 (MQ=255)                                                                         gAACAGCCACCTGGGTCAGCTGGCACAGAACGAAGACCTGTCGCCTTACATTCTGTAAGACCCGTTTCGACAGTTTCGCGGGCAAAACCGCTCCAACACCCCCCACCACAACCCCTGGGCCTGGGGAGATACGGGCCGGGGC‑CGGCttc                                                                       >  8:167238/1‑148 (MQ=255)                                                                               ccACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCcgcg                                                                 <  3:54034/149‑1 (MQ=255)                                                                                                              cTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGccc                                                                    <  5:313097/115‑1 (MQ=255)                                                                                                                      ttACATTCTGTAAGACCGGTTTCGACAGTTTCGCTGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGTGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGaa                              <  7:138693/145‑1 (MQ=255)                                                                                                                      ttACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGGAAACCCCCAACAGCACGCCCCCCCCCAAACCAAGGGGCGGGGGTGATACGTGCGGGGGCGGGGGTTGCCC‑CGCAAAGGGCCCTGAATACCAACCCCCAAAACAGGAAGcag                          >  2:103862/1‑147 (MQ=255)                                                                                                                         ttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGgggc‑gggc                                                                          <  8:300137‑M1/72‑1 (MQ=255)                                                                                                                         ttatgggggagggattcaagggcctcTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGgggc‑gggc                                                                          >  7:300137‑M1/27‑98 (MQ=255)                                                                                                                                      cGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTccc          <  3:93482/149‑1 (MQ=255)                                                                                                                                              aaaGTTTCGCGGGAAAGCCCGCTCCTGCACGCGAAACCAAAACCCTTGGGCATTTTGTGATCCGTGCGGGTGA‑TGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAATCTGGAAGCTGTGCTTCATCAGCTCCCTAGAGAtt  <  7:162740/147‑1 (MQ=255)                                                                                                                                                  tttCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGAtt  >  6:98314/1‑145 (MQ=255)                                                                                                                                                  tttCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGAtt  <  5:98314/145‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 AGTGTCGTTCAGTGCGGGCGACCTGGCCAGCACCCATGACGAAGCGCCGATCCAGATCGACGCGGCGTATGTGAACAGCCACCTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCTCCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGC‑GGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATCAGCTCCCGAGAGATT  >  NC_002947/5698581‑5698870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.