New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5865008 =	42 (0.810)	3 (0.060)	3/246	NT	6.5%	coding (1143/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase
	?	NC_002947	5865052 =	47 (0.960)					coding (1099/2253 nt)	cadA‑III	cadmium translocating P‑type ATPase

CCTTGATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAGGGTCGACTGCCCG  >  NC_002947/5864860‑5865155                                                                                                                                                     |                                                                                                                                                    ccTTGATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGc                                                                                                                                                     >  6:108208/1‑149 (MQ=255) ccTTGATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGc                                                                                                                                                     >  6:79271/1‑149 (MQ=255)     gATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCggtg                                                                                                                                                 >  4:74830/1‑149 (MQ=255)     gATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCggt                                                                                                                                                  <  2:2539/148‑1 (MQ=255)     gATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCggt                                                                                                                                                  <  5:108208/148‑1 (MQ=255)      ccaggcgggggcgctggagtttcgcgtcaccgccgctgccgggcagtcgaccctggcgcggatcatcaaggcggtggaggaagcgcaaggcgcgcgggcgcctacccagcgctttgtcgaccgtttttcgcgcatctacacccCggtgg                                                                                                                                                <  4:186376‑M1/6‑1 (MQ=255)      aTCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCggtg                                                                                                                                                 <  2:269705/148‑1 (MQ=255)      aTCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGACGCCAGCCAGGAACAGCggtg                                                                                                                                                 <  8:254631/148‑1 (MQ=255)                      gcgcgGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCAAGGc                                                                                                                                 >  5:65923/1‑148 (MQ=255)                                       ccaCTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCAACAGCAGCACCAAGGCGAGGTAAACCCAGTCGAACCACGCGCCCGCCACGAACAGCGGAGGAAACATCGCCACGGCAAACCCGAAGTCCAacac                                                                                                               >  7:114404/1‑149 (MQ=255)                                         aCTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAAcacca                                                                                                             <  5:79271/149‑1 (MQ=255)                                           tGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACaccacc                                                                                                           >  3:209493/1‑149 (MQ=255)                                           tGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACaccacc                                                                                                           >  6:223860/1‑149 (MQ=255)                                              gggcagtcgaccctggcgcggatcatcaaggcggtggaggaagcgcaaggcgcgcgggcgcctacccagcgctttgtcgaccgtttttcgcgcatctacacccCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggg                                                                                                        >  4:27537‑M1/104‑149 (MQ=255)                                              cGATGGTCACCGGTGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCAAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggg                                                                                                        <  4:209493/149‑1 (MQ=255)                                                 tGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGgtg                                                                                                     >  3:250150/1‑149 (MQ=255)                                                  ggTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggggag                                                                                                     >  7:145855/1‑146 (MQ=255)                                                  ggTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggg                                                                                                        >  7:150088/1‑145 (MQ=255)                                                  ggTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggg                                                                                                        <  8:150088/145‑1 (MQ=255)                                                  ggTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCggg                                                                                                        <  8:145855/145‑1 (MQ=255)                                                   gTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGgtgt                                                                                                    <  7:129495/148‑1 (MQ=255)                                                   gTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGgtg                                                                                                     >  6:168607/1‑147 (MQ=255)                                                        cGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGCGGTGTAGATgc                                                                                              >  3:47354/1‑149 (MQ=255)                                                               gagaACACCAGCGCGCACGGGCAGGCCACCAACAGCAGCACCAACGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCACCGCCACGGCCAAGGCGATGTCGAACACCACCGGCGTCAAGATGCGCGaaa                                                                                        >  7:151979/1‑148 (MQ=255)                                                                       tcaaggcggtggaggaagcgcaaggcgcgcgggcgcctacccagcgctttgtcgaccgtttttcgcgcatctacacccCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGgt                                                                                                      <  5:223735‑M1/48‑1 (MQ=255)                                                                       tcaaggcggtggaggaagcgcaaggcgcgcgggcgcctacccagcgctttgtcgaccgtttttcgcgcatctacacccCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGgt                                                                                                      >  6:223735‑M1/79‑126 (MQ=255)                                                                         gcgcgcACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGAc                                                                              >  6:327854/1‑148 (MQ=255)                                                                           gcgcACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACa                                                                             >  3:273334/1‑147 (MQ=255)                                                                                            caccaGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGccc                                                          >  3:247292/1‑149 (MQ=255)                                                                                                agcagcACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCcgcgc                                                      <  4:250150/149‑1 (MQ=255)                                                                                                 gcagcaCCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCcgcgcg                                                     >  3:201301/1‑149 (MQ=255)                                                                                                     caCCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCtt                                                 <  8:40313/149‑1 (MQ=255)                                                                                                      aacAAGGCGCTGTAAACGCAGTCGAACCAGGAGCCAGCCAGGAACAGCGGTGGTATCAGCGCGACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTg                                                <  8:114404/147‑1 (MQ=255)                                                                                                       ccAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTgc                                               <  5:327854/149‑1 (MQ=255)                                                                                                       ccAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTgc                                               >  1:240134/1‑149 (MQ=255)                                                                                                       ccAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTgc                                               >  5:144384/1‑149 (MQ=255)                                                                                                       ccAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTgc                                               <  5:168607/149‑1 (MQ=255)                                                                                                        cAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTgcg                                              >  5:67677/1‑149 (MQ=255)                                                                                                                  tAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCAc                                    <  4:247292/149‑1 (MQ=255)                                                                                                                     aCCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTTTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGc                                 >  5:104936/1‑149 (MQ=255)                                                                                                                       ccAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCt                               <  5:223860/149‑1 (MQ=255)                                                                                                                          gTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTtga                            <  2:136733/149‑1 (MQ=255)                                                                                                                             gAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTTTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTtgatga                         <  6:104936/149‑1 (MQ=255)                                                                                                                               aCCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTtcc                                         <  6:261638/131‑1 (MQ=255)                                                                                                                                  aGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCcgc                    >  3:77486/1‑149 (MQ=255)                                                                                                                                   ggCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAg                                                                >  5:284410/1‑104 (MQ=255)                                                                                                                                   ggCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAg                                                                <  6:284410/104‑1 (MQ=255)                                                                                                                                    gcgcCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCgcgc                  <  4:273334/149‑1 (MQ=255)                                                                                                                                        cagccagGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAgg              <  4:77486/149‑1 (MQ=255)                                                                                                                                        cagccagGAACACCGGCGGGATCACCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCCCGAAACACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAgg              <  6:15153/149‑1 (MQ=255)                                                                                                                                         agccagGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCAACCGCCTTGATGATCCGCGCCAggg             >  4:195435/1‑149 (MQ=255)                                                                                                                                         agccagGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAAAACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAtgg             <  6:65923/149‑1 (MQ=255)                                                                                                                                             agGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAGGGTCGa         <  4:201301/149‑1 (MQ=255)                                                                                                                                                 aCAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAGGGTCGACTGc     <  6:144384/149‑1 (MQ=255)                                                                                                                                                  cAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTGGATGATACGCGCAAGGGTCGACTGcc    >  7:269894/1‑149 (MQ=255)                                                                                                                                                  cAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTACCTCCACCGCCTTGATGATCCGCGCCAGGGTCGACTGcc    >  7:274408/1‑149 (MQ=255)                                                                                                                                                    gCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAGGGTCGACTGCCCg  >  7:243697/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCTTGATCAGGATGCCTTTGCGCGCGGCGGCGGCCAGGCCACTGACGATGGTCACCGGGGTCGAGATCACCAGCGCGCACGGGCAGGCCACCACCAGCAGCACCAAGGCGCGGTAAACCCAGTCGAACCAGGCGCCAGCCAGGAACAGCGGTGGTATCAGCGCCACGGCCAAGGCGATGGCGAACACCACCGGGGTGTAGATGCGCGAAAAACGGTCGACAAAGCGCTGGGTAGGCGCCCGCGCGCCTTGCGCTTCCTCCACCGCCTTGATGATCCGCGCCAGGGTCGACTGCCCG  >  NC_002947/5864860‑5865155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.