New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 769351	39 (0.760)	3 (0.060)	3/244	NT	8.6%	coding (1429/1440 nt)	mmuP	S‑methyl‑L‑methionine transporter
	?	NC_002947	= 769381	27 (0.560)					intergenic (+19/‑27)	mmuP/PP_0661	S‑methyl‑L‑methionine transporter/transcriptional regulator AmpR

GTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAG  >  NC_002947/769237‑769523                                                                                                                                                  |                                                                                                                                               gTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcgg                                                                                                                                             <  2:199605‑M2/148‑4 (MQ=255)            cTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACg                                                                                                                                 <  1:199605/149‑1 (MQ=255)                      cccTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAgccgcc                                                                                                                       >  7:246448/1‑149 (MQ=255)                        cTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGa                                                                                                                     <  2:300244/149‑1 (MQ=255)                             ttGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGAcc                                                                                                                >  5:101106/1‑149 (MQ=255)                               gCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGAccc                                                                                                               <  4:185410/148‑1 (MQ=255)                                    gTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGaaa                                                                                                          <  7:88808/148‑1 (MQ=255)                                     tGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAAc                                                                                                        >  3:311718/1‑149 (MQ=255)                                        tACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCtt                                                                                                     >  7:1245/1‑149 (MQ=255)                                         aCCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTg                                                                                                    >  2:290576/1‑149 (MQ=255)                                         aCCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTg                                                                                                    >  3:117666/1‑149 (MQ=255)                                          ccTGGGCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCt                                                                                                      <  3:46446/146‑1 (MQ=255)                                          ccTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCtt                                                                                                     <  5:275349/147‑1 (MQ=255)                                           cTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCa                                                                                                                                   <  2:192268/116‑1 (MQ=255)                                           cTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCa                                                                                                                                   >  1:192268/1‑116 (MQ=255)                                                      gCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAAc                                                                                        <  1:9597/148‑1 (MQ=255)                                                        tGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTgg                                                                                     >  2:163079/1‑149 (MQ=255)                                                                    aCCGCAGCCGCCGTACGGCCCCGCTGGAAAGTCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCtt                                                                          >  1:197818/1‑149 (MQ=255)                                                                       gCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGaa                                                                      <  4:311718/149‑1 (MQ=255)                                                                       gCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGGTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGaa                                                                      <  8:246448/149‑1 (MQ=255)                                                                            cgccgTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGa                                                                       <  3:121159/143‑1 (MQ=255)                                                                                      ccccGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGt                                                          >  8:150575/1‑146 (MQ=255)                                                                                      ccccGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGt                                                          <  7:150575/146‑1 (MQ=255)                                                                                                 a‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCAc                                            <  6:101106/149‑1 (MQ=255)                                                                                                     gtcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCa                                         >  5:303098/1‑149 (MQ=255)                                                                                                     gtcgCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCACCGCGTTAGTTGAACTTccacaa                                         >  8:225910/1‑144 (MQ=255)                                                                                                        gCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGc                                      <  4:117666/149‑1 (MQ=255)                                                                                                        gCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGc                                      >  1:123123/1‑149 (MQ=255)                                                                                                         ccccAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCg                                                                >  6:315621/1‑122 (MQ=255)                                                                                                              ggTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtact                                                                                             >  2:86111‑M2/1‑37 (MQ=255)                                                                                                              ggTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtact                                                                                             <  1:86111‑M2/88‑52 (MQ=255)                                                                                                                ttCCCAGGCCGCCTGAGCAGGTGATACTAGGCCACcggaacctggggcgacgatttccagcggggccgtacggcggctgcggtacttgcacgtcagccaataggccaggtagcaccaggcaatgaagggcaagccgaagtacagggcaa                              <  4:122473‑M2/149‑115 (MQ=255)                                                                                                                                             ggCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGa   <  1:290576/147‑1 (MQ=255)                                                                                                                                                cACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAg  >  4:222896/1‑145 (MQ=255)                                                                                                                                                cACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAg  <  3:222896/145‑1 (MQ=255)                                                                                                                                                 aCCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCagaa                               <  6:187433/115‑1 (MQ=255)                                                                                                                                                 aCCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCagaa                               >  5:187433/1‑115 (MQ=255)                                                                                                                                                  |                                                                                                                                               GTTGCCCTGTACTTCGGCTTGCCCTTCATTGCCTGGTGCTACCTGGCCTATTGGCTGACGTGCAAGTACCGCAGCCGCCGTACGGCCCCGCTGGAAA‑TCGTCGCCCCAGGTTCCGAGGCCGCCTGAGCAGGTGATACTAGGCCACCGGAACCTAGCCACGAGAAGCCGCCGATGACCCAGAAAACCTTGCCCCCCCTGAACTGGCTGAGAGCCTTCGAAGTGTCGGCGCGTTACTTGAACTTCACCCATGCGGCAGAAGAGCTGCACCTTACCCAAGGGGCCGTGAG  >  NC_002947/769237‑769523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.