New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1928721 =	64 (1.240)	3 (0.060)	3/246	NT	5.8%	coding (1371/2154 nt)	PP_1728	membrane protein
	?	NC_002947	1928791 =	37 (0.760)					coding (1301/2154 nt)	PP_1728	membrane protein

GTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCG  >  NC_002947/1928643‑1928936                                                                                                                                                     |                                                                                                                                                   gTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGatca                                                                                                                                                    >  4:61360/1‑149 (MQ=255)  ttcggctacctgctggtgcacctgttcatctggctggtgttcatcgagttgggcctgcgcgtgtggggcgtgtcgatGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGatcat                                                                                                                                                   >  7:42634‑M1/78‑149 (MQ=255)  ttcggctacctgctggtgcacctgttcatctggctggtgttcatcgagttgggcctgcgcgtgtggggcgtgtcgatGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGatcat                                                                                                                                                   <  7:293885‑M1/72‑1 (MQ=255)     ggctacctgctggtgcacctgttcatctggctggtgttcatcgagttgggcctgcgcgtgtggggcgtgtcgatGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGa                                                                                                                                                >  8:293885‑M1/75‑149 (MQ=255)     gCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCg                                                                                                                                                 <  3:182347/148‑1 (MQ=255)      ccAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGac                                                                                                                                               >  5:80804/1‑149 (MQ=255)           ccccGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGcc                                                                                                                                          >  7:213971/1‑149 (MQ=255)                gcgcGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCcaca                                                                                                                                     >  3:305386/1‑149 (MQ=255)                      gcgcACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCa                                                                                                                               <  6:80804/149‑1 (MQ=255)                          aCCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGcc                                                                                                                           <  2:125803/149‑1 (MQ=255)                               ggCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACt                                                                                                                      <  8:158238/149‑1 (MQ=255)                               ggCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACt                                                                                                                      <  7:139457/149‑1 (MQ=255)                                 cATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTc                                                                                                                     >  7:34953/1‑148 (MQ=255)                                     gtgtACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATg                                                                                                                 <  8:143764/148‑1 (MQ=255)                                       gtACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGcccc                                                                                                                                        <  6:167451/123‑1 (MQ=255)                                       gtACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGcccc                                                                                                                                        >  5:167451/1‑123 (MQ=255)                                        tACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAac                                                                                                              <  3:11709/148‑1 (MQ=255)                                          cggcggTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAacac                                                                                                            >  1:70413/1‑148 (MQ=255)                                           ggcggTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACAcca                                                                                                          <  7:84904/149‑1 (MQ=255)                                                      cAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGAt                                                                                                   >  7:147915/1‑145 (MQ=255)                                                      cAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGAt                                                                                                   <  8:147915/145‑1 (MQ=255)                                                      cAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGaa                                                                                                >  8:237940/1‑148 (MQ=255)                                                       aaGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCAGATCATCGAAACGCCACCCACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGaa                                                                                                >  2:245724/1‑147 (MQ=255)                                                        aGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAg                                                                                             <  3:61360/149‑1 (MQ=255)                                                          gATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGt                                                                                           >  8:57761/1‑149 (MQ=255)                                                            tCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGc                                                                                         <  8:61858/149‑1 (MQ=255)                                                                 acCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACcag                                                                                    >  2:140658/1‑149 (MQ=255)                                                                   cagccagGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAAAACCAGCCAGATGAACAGGTGCACcag                                                                                    >  7:266400/1‑147 (MQ=255)                                                                       cagGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTa                                                                              <  6:176858/149‑1 (MQ=255)                                                                          tcgatgatcagcttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcctggccggcacgctgatcATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGcc                                                                           >  8:293885‑M2/76‑149 (MQ=255)                                                                             atgatcagcttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcctggccggcacgctgatcATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGaa                                                                        >  7:42634‑M2/73‑149 (MQ=255)                                                                             atgatcagcttcgccgagggcgacggccatgacatcagcctgcgcctgctgggcctggccggcacgctgatcATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGaa                                                                        <  7:293885‑M2/77‑1 (MQ=255)                                                                             aCGATCCGCGTGCCGGCCAGGCCCAGCCGGCGCAGGCTTATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGaa                                                                        <  8:266400/149‑1 (MQ=255)                                                                               GATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGt                                                                      >  7:237940‑M1/1‑149 (MQ=255)                                                                                                  cccAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGTCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCg                                                        <  3:256678/144‑1 (MQ=255)                                                                                                  cccAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTa                                                   <  4:305386/149‑1 (MQ=255)                                                                                                            gcaggcTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGtt                                                                     <  4:238809/121‑1 (MQ=255)                                                                                                            gcaggcTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGtt                                                                     >  3:238809/1‑121 (MQ=255)                                                                                                             caggcTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCTACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGgc                                        <  6:187632/149‑1 (MQ=255)                                                                                                                         aTGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGccc                           >  4:15264/1‑149 (MQ=255)                                                                                                                         aTGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGccc                           >  1:44335/1‑149 (MQ=255)                                                                                                                               gTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTgg                     <  1:140658/149‑1 (MQ=255)                                                                                                                               gTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTgg                     <  8:213971/149‑1 (MQ=255)                                                                                                                                tCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTggg                    >  6:38873/1‑149 (MQ=255)                                                                                                                                    ccTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGccc                           <  2:156886/138‑1 (MQ=255)                                                                                                                                    ccTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGccc                           >  1:156886/1‑138 (MQ=255)                                                                                                                                         gCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTggcgg            >  1:108060/1‑148 (MQ=255)                                                                                                                                             aGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTGGCGGCATgg       <  1:245724/149‑1 (MQ=255)                                                                                                                                                tgatcATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTGGCGGCATGGCg     >  2:201757‑M2/6‑148 (MQ=255)                                                                                                                                                  atcATCGACACGCCCCACACGCGCAGGCCCAACTCGCTGAACACCAGCCAGATGCACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCTCTGCTGGCCCGCTTGGGGTTGGCGGCATGGCg     <  1:201757‑M2/144‑1 (MQ=255)                                                                                                                                                   tcATCGACAAGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCg  >  4:76384‑M2/3‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTGTCTGCAAGGATCCACACCAGCCAGGCCACGATCAGCGTGCCGGCCAGGCCCAGCAGGCGCAGGCTGATGTCATGGCCGTCGCCCTCGGCGAAGCTGATCATCGACACGCCCCACACGCGCAGGCCCAACTCGATGAACACCAGCCAGATGAACAGGTGCACCAGCAGGTAGCCGAAGTTGCGCAGGCGTTCGGTGTACACCGCCTGGCGCT‑TGCTGGCCCGCTTGGGGTTGGCGGCATGGCGTCG  >  NC_002947/1928643‑1928936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.