| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2085428 = | 61 (1.180) | 5 (0.100) | 4/244 | NT | 10.2% | intergenic (+137/‑458) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | 2085520 = | 31 (0.640) | intergenic (+229/‑366) | PP_1864/PP_1865 | hypothetical protein/transposase | |||||
TCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGA > NC_002947/2085372‑2085662 | tCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCg > 2:92153/1‑149 (MQ=32) tAAGCGCGCGGTAGTTCAGGCGATGCAGAATGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCg > 1:182168/1‑147 (MQ=17) cgtcggctcccctcatccggcccctacgctacgctccggggtcccctcactccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGGACCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGa > 1:45394‑M1/54‑149 (MQ=255) aGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGa < 1:174740/147‑1 (MQ=32) aGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGa < 6:37711/147‑1 (MQ=32) aGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCCGGAGCAAG‑CCCGGa < 7:276734/147‑1 (MQ=17) gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGt > 1:27023/1‑148 (MQ=32) gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGt > 1:303003/1‑148 (MQ=32) cgcgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAACGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGa < 8:15352/149‑1 (MQ=17) ggctcccctcatccggcccctacgctacgctccggggtcccctcactccGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAg > 2:80584‑M1/50‑149 (MQ=255) gcgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAg < 2:311784/149‑1 (MQ=32) cgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGTCTGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAg < 1:234562/149‑1 (MQ=12) cgcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAgg < 1:92153/149‑1 (MQ=32) gcgGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAggg < 7:306673/149‑1 (MQ=32) gATGCAGTTTGCGACTTCAGGAGGCCGAGCGCAGGGCTGGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCGGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGagcgta < 1:14603/149‑1 (MQ=12) aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGagcgtag > 5:100652/1‑149 (MQ=31) aggaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg > 7:288111/1‑149 (MQ=11) ggaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCAGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAgg > 2:213464/1‑149 (MQ=14) gaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAggg > 7:26891/1‑149 (MQ=32) gCCGAGGGCAGGGCTTGGGGAGGGTGGGGCGGGGCATGGATGCCCGTCATGCGCTGGGCGCGAGG‑TGGGGG‑CGTGCAGCGCGGTCCTCCCGGGAGCAAG‑CGCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGa < 2:182168/148‑1 (MQ=11) gCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAg > 7:85407/1‑149 (MQ=32) ctcactccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGcc > 2:80584‑M2/101‑149 (MQ=255) tccgggcttgctcccgggaggaccgcgctgcaggtccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACg > 1:45394‑M2/97‑149 (MQ=255) ggTTGCGGAGGGTGGGGACGGGCATGTACGCCGGTAAAGGGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCGGGTGGGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTg > 8:26891‑M1/3‑149 (MQ=255) gggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaaccccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGttt > 4:169331‑M2/93‑149 (MQ=255) TTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGt < 3:178027‑M1/149‑1 (MQ=255) gcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagcccGGAGTGAGGGGACCCCGGAGCGTACCGTAGGGGCCGGATCAGGGGAGCCGACGGCATTg > 2:160207‑M2/91‑149 (MQ=255) gagggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACtt > 5:155411/1‑149 (MQ=34) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGTGGACCACTGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTg < 5:316065/141‑1 (MQ=255) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACACCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTggagatag > 6:316065/1‑142 (MQ=255) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCAGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACttt < 1:213464/149‑1 (MQ=21) ggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGCCCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCa > 8:180583/1‑149 (MQ=21) aCGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGa < 2:27023/148‑1 (MQ=34) cATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAGTCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCaaa > 1:263670/1‑149 (MQ=21) gATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGTCGTGGCCAAAGTaa < 6:100652/148‑1 (MQ=255) aTGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAcc > 6:137843/1‑149 (MQ=34) gCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccg > 6:144393/1‑149 (MQ=34) ccGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 3:135555/1‑149 (MQ=34) ccGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgcc > 7:29179/1‑149 (MQ=34) cGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACccgccg > 7:97934/1‑149 (MQ=34) ccccAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACACGCCGGAAGGGCGGAAAgg > 7:272295/1‑149 (MQ=21) aGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGaa > 5:204576/1‑149 (MQ=34) gttGGGG‑CCGGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGTGTGCGGGGACCCCGGAGCGTAGGGTTGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAAt < 2:263670/146‑1 (MQ=11) cgcgcGGGCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGt < 5:59961/131‑1 (MQ=21) ggggTCCTCCGGGGAGCAAG‑CCGGGTGGGAGGGGACCCGGGAGGGTTGGGTTGGGGCGGGTTGTGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtg < 6:301239/147‑1 (MQ=11) ctccctccgcaagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTgaatgaat < 1:80584‑M2/133‑1 (MQ=255) ccGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGt > 6:16072/1‑149 (MQ=37) aagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGa > 2:245006‑M2/7‑149 (MQ=255) aagcccGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGa < 6:155411‑M2/143‑1 (MQ=255) | TCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGG‑ATGGGG‑CCTGCAGCGCGGTCCTCCCGGGAGCAAG‑CCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGA > NC_002947/2085372‑2085662 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |