New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2626206 =	26 (0.500)	3 (0.060)	3/242	NT	11.5%	intergenic (+9/‑141)	PP_t40/PP_2298	tRNA‑His/hypothetical protein
	?	NC_002947	2626239 =	22 (0.460)					intergenic (+42/‑108)	PP_t40/PP_2298	tRNA‑His/hypothetical protein

TGTAAGGTTGTACCGCAAGACCGCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCA  >  NC_002947/2626092‑2626383                                                                                                                                                    |                                                                                                                                                 tGTAAGGTTGTACCGCAAGACCGCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCttttt                                                                                                                                                 >  7:25387/1‑149 (MQ=255) tGTAAGGTTGTACCGCAAGACCGCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCttttt                                                                                                                                                 >  8:150206/1‑149 (MQ=255)   tAAGGTTGTACCGCAAGACCGCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTttttgt                                                                                                                                               >  2:123767/1‑149 (MQ=255)      accggctgaaatctaacagcttttattggggtgccaccagtggattacaaggggcaggaggtgttttggctggggcgcggctcatcaccgctacgcagacccaaaacaaAAAGGCGCCTTGATCGTGAGATCGGGCGCCTttttgtttt                                                                                                                                            >  1:189598‑M1/110‑149 (MQ=255)          gctgaaatctaacagcttttattggggtgccaccagtggattacaaggggcaggaggtgttttggctggggcgcggctcatcaccgctacgcagacccaaaacaaAAAGGCGCCTTGATCGTGAGATCGGGCGCCTttttgttt                                                                                                                                             <  6:75472‑M1/39‑1 (MQ=255)          gctgaaatctaacagcttttattggggtgccaccagtggattacaaggggcaggaggtgttttggctggggcgcggctcatcaccgctacgcagacccaaaacaaAAAGGCGCCTTGATCGTGAGATCGGGCGCCTttttgttt                                                                                                                                             >  5:75472‑M1/106‑144 (MQ=255)                       gCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGtg                                                                                                                           <  8:25387/149‑1 (MQ=255)                         aaTATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGtgat                                                                                                                         <  1:123767/149‑1 (MQ=255)                               gtggGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGcc                                                                                                                    <  2:1237/148‑1 (MQ=255)                                    cGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGccc                                                                                                              >  1:28838/1‑149 (MQ=255)                                            aGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGc                                                                                                                     <  4:7835/134‑1 (MQ=255)                                            aGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGc                                                                                                                     >  3:7835/1‑134 (MQ=255)                                                 gtcgagCGCTGGATTGTGATTCACGTGGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAacac                                                                                                  <  2:248710/145‑1 (MQ=255)                                                 gTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACAcc                                                                                                 <  7:150206/149‑1 (MQ=255)                                                       cgcTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGt                                                                                                                            <  6:22699/116‑1 (MQ=255)                                                       cgcTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGt                                                                                                                            >  5:22699/1‑116 (MQ=255)                                                             aTTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTg                                                                                     >  4:98927/1‑149 (MQ=255)                                                                  gATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATc                                                                                >  6:296929/1‑149 (MQ=255)                                                                               gTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCAcc                                                                   >  7:106816/1‑149 (MQ=255)                                                                                  ggTTCGATACCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCAcccc                                                                 >  2:31142/1‑148 (MQ=255)                                                                                        aTTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATaa                                                            >  7:179802/1‑147 (MQ=255)                                                                                           cccATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCt                                                       >  7:127282/1‑149 (MQ=255)                                                                                                    cACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGAttt                                              <  8:106816/149‑1 (MQ=255)                                                                                                            atTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGt                                      >  3:159513/1‑149 (MQ=255)                                                                                                            aaaacaaaaaggcgcccgatctcacgatcaaggcgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGt                                      >  1:189598‑M2/41‑149 (MQ=255)                                                                                                             ttCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGtt                                     >  6:61107/1‑149 (MQ=255)                                                                                                             aaacaaaaaggcgcccgatctcacgatcaaggcgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGc                                          >  5:75472‑M2/40‑144 (MQ=255)                                                                                                             aaacaaaaaggcgcccgatctcacgatcaaggcgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGc                                          <  6:75472‑M2/105‑1 (MQ=255)                                                                                                                cTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACGCGAATAAAAGCTGTTAGATTTCAGCCGGTTGa                                   <  1:31142/148‑1 (MQ=255)                                                                                                                         GCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACtgg                                                                          <  1:146682‑M1/100‑1 (MQ=255)                                                                                                                         GCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACtgg                                                                          >  2:146682‑M1/1‑100 (MQ=255)                                                                                                                                   tGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGt                                                     >  6:32964/1‑111 (MQ=255)                                                                                                                                   tGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGt                                                     <  5:32964/111‑1 (MQ=255)                                                                                                                                      gaTCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACtggtg                                                                        >  8:238120/1‑89 (MQ=255)                                                                                                                                        tCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCaaa          <  2:28838/149‑1 (MQ=255)                                                                                                                                          gggCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAg         <  3:98927/148‑1 (MQ=255)                                                                                                                                             cgcctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGaca     >  1:212644‑M2/8‑149 (MQ=255)                                                                                                                                                ctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGacac    >  7:244330‑M2/5‑147 (MQ=255)                                                                                                                                                ctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGacac    <  8:244330‑M2/143‑1 (MQ=255)                                                                                                                                                ctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGAcacca  <  5:61107‑M2/145‑1 (MQ=255)                                                                                                                                                ctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGACTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCgg              >  2:8788‑M2/5‑137 (MQ=255)                                                                                                                                                ctttTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGACTTCAGCCCGTTGAAACACCGGCCCGTTTGGCCgg              <  1:8788‑M2/133‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TGTAAGGTTGTACCGCAAGACCGCAATATGGTGGGCGTAGCTCAGTTGGTAGAGCGCTGGATTGTGATTCCAGTTGTCGTGGGTTCGATTCCCATCGTCCACCCCATATTCCTGAAAGGCGCCTTGATCGTGAGATCGGGCGCCTTTTTGTTTTGGGTCTGCGTAGCGGTGATGAGCCGCGCCCCAGCCAAAACACCTCCTGCCCCTTGTAATCCACTGGTGGCACCCCAATAAAAGCTGTTAGATTTCAGCCGGTTGAAACACCGGCCCGTTTGGCCGGCAAAGGACACCA  >  NC_002947/2626092‑2626383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.