New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2669969 =	43 (0.830)	3 (0.060)	3/252	NT	7.1%	coding (2349/2610 nt)	acnB	aconitate hydratase B
	?	NC_002947	2670006 =	37 (0.740)					coding (2312/2610 nt)	acnB	aconitate hydratase B

TGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCAGCTTGCCGGCAGC  >  NC_002947/2669860‑2670154                                                                                                                                                   |                                                                                                                                                     cgacccgtctgtggctggctccgccaaccaagatggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCt                                                                                                                                                    >  2:93425‑M1/110‑149 (MQ=255)        aGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCAttt                                                                                                                                             <  6:66573/149‑1 (MQ=255)          tgtggctggctccgccaaccaagatggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcagc                                                                                                                                                      >  6:249473‑M1/101‑138 (MQ=255)          tgtggctggctccgccaaccaagatggacgctcaccagctgaccgaagaaggctactacggcatctacggcaaggccggtgcacgtatggaaatgccaggCTGCACGCGTGCCTGGTTGCCCATGCACAGCGagcagc                                                                                                                                                      <  5:249473‑M1/38‑1 (MQ=255)              aGCGTCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATAc                                                                                                                                       <  8:213724/149‑1 (MQ=255)                          ggCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCt                                                                                                                           >  1:266780/1‑149 (MQ=255)                          ggCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCt                                                                                                                           >  6:260724/1‑149 (MQ=255)                          ggCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCt                                                                                                                           >  8:156433/1‑149 (MQ=255)                            ccGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATa                                                                                                                                        <  2:114621/134‑1 (MQ=255)                             cGATGCCAGGTACACGTTGGTCGCGTCGCCCAGTCGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGc                                                                                                                        <  4:91878/149‑1 (MQ=255)                               aTGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCg                                                                                                                      <  5:285210/149‑1 (MQ=255)                               aTGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCg                                                                                                                      <  1:89893/149‑1 (MQ=255)                                    aGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTg                                                                                                                                                   <  2:117343/115‑1 (MQ=255)                                         cacGTTGGACGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCg                                                                                                             <  8:99804/148‑1 (MQ=255)                                            gTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtag                                                                                                          >  4:193526/1‑148 (MQ=255)                                            gTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCgtag                                                                                                          >  8:229552/1‑148 (MQ=255)                                                 tcgcgtcgcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCct                                                                                                    >  5:276133/1‑149 (MQ=255)                                                        gcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCgg                                                                                             >  3:125618/1‑149 (MQ=255)                                                        gcCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCgg                                                                                             >  7:46960/1‑149 (MQ=255)                                                               cGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCATGGTTCCCAATGCACAGCGAGCAGCCTGGCATTCCCATACGTGCACCGGCCTTGACGTAGATGCCGAAGAAGCcttctt                                                                                                >  6:85255/1‑139 (MQ=255)                                                                ggTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTgg                                                                                     <  2:266780/149‑1 (MQ=255)                                                                     gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGc                                                                                <  1:66357/149‑1 (MQ=255)                                                                     gggAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGc                                                                                >  6:202982/1‑149 (MQ=255)                                                                         aGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTcc                                                                            <  5:202982/149‑1 (MQ=255)                                                                          gTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCa                                                                           >  3:2030/1‑149 (MQ=255)                                                                               gggTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttg                                                                      <  2:156675/149‑1 (MQ=255)                                                                               gggTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttg                                                                      >  8:91527/1‑149 (MQ=255)                                                                                    gAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCttggttgg                                                                 >  1:182287/1‑149 (MQ=255)                                                                                       gTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCg                                                               >  2:173077/1‑148 (MQ=255)                                                                                               cACGGTCGTACCGGTCTGCTCGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGt                                                                                    <  5:94410/119‑1 (MQ=255)                                                                                               cACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGt                                                                                    >  6:94410/1‑119 (MQ=255)                                                                                                    tCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGa                                                 >  6:35579/1‑149 (MQ=255)                                                                                                     cGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGAc                                                <  3:193526/149‑1 (MQ=255)                                                                                                      gAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGAc                                                <  4:2030/148‑1 (MQ=255)                                                                                                      gAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACg                                               >  1:146646/1‑149 (MQ=255)                                                                                                       aaCCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACgg                                              >  4:48401/1‑149 (MQ=255)                                                                                                       aaCCGGTCTGCACGCGTGCCTGGTTGACCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACgg                                              >  8:22956/1‑149 (MQ=255)                                                                                                           aggctgctcgctgtgcatgggcaaccaggcacgcgtgcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCg                                          >  2:93425‑M2/41‑149 (MQ=255)                                                                                                             gctgctcgctgtgcatgggcaaccaggcacgcgtgcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCcaca                                                   >  6:249473‑M2/39‑138 (MQ=255)                                                                                                             gctgctcgctgtgcatgggcaaccaggcacgcgtgcagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCcaca                                                   <  5:249473‑M2/100‑1 (MQ=255)                                                                                                                GCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATg                                     <  7:44271‑M1/149‑1 (MQ=255)                                                                                                                 CACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAAt                                      >  7:156433‑M1/1‑147 (MQ=255)                                                                                                                 CACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGc                                    >  7:229552‑M1/1‑149 (MQ=255)                                                                                                                 CACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGc                                    >  5:260724‑M1/1‑149 (MQ=255)                                                                                                                                   cATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTtctc                    >  6:42423/1‑147 (MQ=255)                                                                                                                                       cacaGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCcagcag              <  6:276133/149‑1 (MQ=255)                                                                                                                                        acaGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCagcagc             <  5:35579/149‑1 (MQ=255)                                                                                                                                        acaGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCagcagc             >  2:149024/1‑149 (MQ=255)                                                                                                                                              agcagcCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCAGCTTGCCg       <  7:22956/149‑1 (MQ=255)                                                                                                                                                cagCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCAGCTTGCCGGc     <  4:125618‑M2/146‑1 (MQ=255)                                                                                                                                                   ccTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCAGCTTGCCGGCAgc  >  2:188791/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGATCGAAGCGACAGCGGCCAGCTCGGCCGATGCCAGGTACACGTTGGTCGCGTCGCCCAGACGGTTCGGGAAGTTACGGGTCGAGGTGGAGACCACGGTCGAACCGGTCTGCACGCGTGCCTGGTTGCCCATGCACAGCGAGCAGCCTGGCATTTCCATACGTGCACCGGCCTTGCCGTAGATGCCGTAGTAGCCTTCTTCGGTCAGCTGGTGAGCGTCCATCTTGGTTGGCGGAGCCAGCCACAGACGGGTCGGAATGCCACCCTTGACCTTCTCCAGCAGCTTGCCGGCAGC  >  NC_002947/2669860‑2670154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.