| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5552330 = | 57 (1.100) | 5 (0.100) | 5/246 | NT | 9.3% | coding (1559/1566 nt) | PP_4882 | iron ABC transporter permease |
| ? | NC_002947 | 5552377 = | 44 (0.900) | intergenic (+40/+621) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein | |||||
CCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCTGA > NC_002947/5552231‑5552520 | ccctcttgggtggggcttgtagtatatacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGa > 8:100717‑M1/100‑148 (MQ=255) cAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCATTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGt < 4:55688/149‑1 (MQ=255) tCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGcc > 4:253283/1‑147 (MQ=255) gggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTa > 2:248977‑M1/93‑148 (MQ=255) cGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGcc > 3:8092/1‑146 (MQ=255) gTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACt < 1:322832/149‑1 (MQ=255) gcttttagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTGCCTAGACTtcat < 8:261246‑M2/17‑1 (MQ=255) ggcggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTtcatca < 6:208980/149‑1 (MQ=255) ggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACaa < 6:151804/149‑1 (MQ=255) cgcCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCa < 2:256032/149‑1 (MQ=255) ggcgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAAct < 2:55700/149‑1 (MQ=255) ttgttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGTGGCACAAGCCTGAGTGCCTAGACTTCATCACaa < 1:206474/131‑1 (MQ=255) ttgttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACaa > 2:206474/1‑130 (MQ=255) ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCAc > 1:236511/1‑147 (MQ=255) ttGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCTGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCa < 5:30084/149‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 2:267414/148‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAg > 6:183235/1‑149 (MQ=255) ccGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAAc < 4:275905/148‑1 (MQ=255) cGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGACGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAATAACa > 4:278758/1‑148 (MQ=255) gtgtATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAgg > 8:292338/1‑149 (MQ=255) tttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTa < 5:183235/149‑1 (MQ=255) ttGCTGACTACGAGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTa < 3:282019/148‑1 (MQ=255) gCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGa > 6:192269/1‑148 (MQ=255) cTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAta < 4:63023/149‑1 (MQ=255) cTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAta > 5:293667/1‑149 (MQ=255) aCTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGAtacta > 3:73170/1‑149 (MQ=255) gcgGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGc > 4:296160/1‑149 (MQ=255) atgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTAAAAGc < 8:261246‑M1/132‑1 (MQ=255) ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGccc > 3:215386/1‑149 (MQ=255) ggATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGccc > 3:183881/1‑149 (MQ=255) gTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaaa > 1:22301/1‑118 (MQ=255) gTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCaaa < 2:22301/118‑1 (MQ=255) tttGAACAAAGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccaccca > 2:265269/1‑148 (MQ=255) taggcactcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccaccc > 2:248977‑M2/57‑148 (MQ=255) ttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccaccc > 4:3487/1‑146 (MQ=255) gAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAagag > 6:253355/1‑149 (MQ=255) gAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAaga < 2:236511/148‑1 (MQ=255) aCAAAGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg < 1:265269/149‑1 (MQ=255) cAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGt < 2:150512/149‑1 (MQ=255) tcaggcttgtgcccaggccacatggcggcctgggcaagctttcaagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTATATACTACAAGCCCCACCCAAGAggg > 8:100717‑M2/50‑148 (MQ=255) AGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTaa > 4:8092‑M1/1‑149 (MQ=255) aGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAActct < 6:293667/149‑1 (MQ=255) cccaggccacatggcggcctgggcaagctttcaagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAActct > 6:52145‑M2/39‑149 (MQ=255) ccacatggcggcctgggcaagctttcaagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCAt < 1:248977‑M2/117‑1 (MQ=255) ccAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATa > 6:225493/1‑149 (MQ=255) cAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCa > 2:94047/1‑146 (MQ=255) cAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCa > 2:93885/1‑146 (MQ=255) gccgccATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTc < 3:82035/97‑1 (MQ=255) gccgccATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTc > 4:82035/1‑97 (MQ=255) ccgccATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCt < 5:253355/149‑1 (MQ=255) cgccATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAATAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCtt < 3:278758/149‑1 (MQ=255) cgccATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCtt > 5:221195/1‑149 (MQ=255) tgGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGaaa < 1:94047/148‑1 (MQ=255) gCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAAccc < 7:261246/149‑1 (MQ=255) ggCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCga < 4:73170/148‑1 (MQ=255) ggCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCga < 5:225493/148‑1 (MQ=255) cacaAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCgaga > 4:9839/1‑148 (MQ=255) caagcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCt < 7:292338‑M2/142‑1 (MQ=255) gcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCtt > 4:58832‑M2/5‑116 (MQ=255) gcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCtt < 3:58832‑M2/112‑1 (MQ=255) gcctGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCTGa > 7:95806‑M2/5‑148 (MQ=255) | CCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTG‑GGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGGTAACAAAACTCTTTTCATAGACCTTGGGAAACCCTCGAGATCTGA > NC_002947/5552231‑5552520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |