New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5637262	50 (0.970)	4 (0.080)	4/252	NT	8.4%	coding (1630/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 5637286	39 (0.780)					coding (1654/1803 nt)	PP_4948	acyl‑CoA dehydrogenase family protein

ACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTC  >  NC_002947/5637139‑5637432                                                                                                                                                    |                                                                                                                                                   aCCCTGGCCCTGCTCGGCGACCTGGCCCAATGCAAAGTCGCTGGGGCCCTGGACAACTCTGCCTTGTACCTCAAGGCCTTGGGCCACTGCGTGATCGGCTGGCGCTGGCTGTAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAgg                                                                                                                                                    <  5:312155/148‑1 (MQ=255)       gCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACgg                                                                                                                                              <  4:32507/148‑1 (MQ=255)          cTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCTTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGACCGgctgc                                                                                                                                          >  3:278108/1‑149 (MQ=255)            gCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGctgctg                                                                                                                                        <  7:159891/149‑1 (MQ=255)                 gCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGgaac                                                                                                                                                >  8:84971‑M2/1‑132 (MQ=255)                 gCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGgaac                                                                                                                                                <  7:84971‑M2/136‑5 (MQ=255)                          cccAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTAc                                                                                                                          <  3:15173/149‑1 (MQ=255)                           ccAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGCAACAGGCGGTTCACGCCGAGGTTGGCATCCTCAAGGGACCGGCTGCTGATCGCGAATTCTAca                                                                                                                         >  5:241537/1‑148 (MQ=255)                              aGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCg                                                                                                                      <  1:156965/149‑1 (MQ=255)                                  aaatgcGCTGTTTCCCGTGCCAACTGTTCCCTGTTCCTCAAGGCCTTGGGCCACTGGGTGTTGGGGTTGCGCGGGCTTGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGgcaa                                                                                                                  <  6:241537/144‑1 (MQ=255)                                        gCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGgcaagctgc                                                                                                             >  8:3787/1‑148 (MQ=255)                                                ccTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTgcgc                                                                                                    <  2:68515/149‑1 (MQ=255)                                                 cTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATcgc                                                                                                                                   <  5:6345/117‑1 (MQ=255)                                                 cTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATcgc                                                                                                                                   >  6:6345/1‑117 (MQ=255)                                                      cAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTAtt                                                                                              <  4:278108/149‑1 (MQ=255)                                                       aaCTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGgct                                                                                                                                            >  7:123834/1‑102 (MQ=255)                                                       aaCTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGgct                                                                                                                                            <  8:123834/102‑1 (MQ=255)                                                               cTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTTACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCt                                                                                     >  8:133359/1‑149 (MQ=255)                                                               cTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCt                                                                                     >  3:47967/1‑149 (MQ=255)                                                                     ccTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTc                                                                                            >  6:77868/1‑136 (MQ=255)                                                                     ccTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTc                                                                                            <  5:77868/136‑1 (MQ=255)                                                                     ccTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAg                                                                               >  6:49580/1‑149 (MQ=255)                                                                      cTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAACCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAg                                                                               >  5:237806/1‑148 (MQ=255)                                                                            gCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCggg                                                                        >  7:305611/1‑149 (MQ=255)                                                                            gCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCggg                                                                        >  2:57526/1‑149 (MQ=255)                                                                              cTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCt                                                                      <  1:57526/149‑1 (MQ=255)                                                                              cTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTCCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCt                                                                      >  1:72627/1‑149 (MQ=255)                                                                                  ggCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTTACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCa                                                                  <  7:133359/149‑1 (MQ=255)                                                                                     cACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATaa                                                               >  7:143716/1‑149 (MQ=255)                                                                                          cGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGa                                                            <  4:47967/147‑1 (MQ=255)                                                                                                   ctggcgctggcTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGc                                                 >  2:124452/1‑149 (MQ=255)                                                                                                      gcgctggcTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTCCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTc                                               <  2:72627/148‑1 (MQ=255)                                                                                                      gatctgtctggAACAGTCGTTTCACGCCTAGCTTTTCATGCTCAAGGGAACGTCTGCTTATCGCGACTTCTACCTCTGCAAGATGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTTCCATAATGAGCTGGCATTGATc                                               <  8:143716/145‑1 (MQ=255)                                                                                                          tggctggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAgg                                           >  5:101221/1‑148 (MQ=255)                                                                                                          tggctggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAgg                                           >  3:219280/1‑148 (MQ=255)                                                                                                              tggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTgcgc                                                                                                    <  1:124013/87‑1 (MQ=255)                                                                                                              tggAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTgcgc                                                                                                    >  2:124013/1‑87 (MQ=255)                                                                                                                  aCAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACacgac                                   >  7:269504/1‑148 (MQ=255)                                                                                                                    aGGCGGTTCACGCCGAGCTTTGCATGCTCAAGGgaaccgcctgttccagccagcgccagccgatcacgcagtggccgaaggccttgaggtacaaggcagagttggccagggcaccagcgactttgccttgggccaggtcgccga                                     <  2:100913‑M2/144‑112 (MQ=255)                                                                                                                    aGGCGGTTCACGCCGAGCTTTGCATGCTCAAGGgaaccgcctgttccagccagcgccagccgatcacgcagtggccgaaggccttgaggtacaaggcagagttggccagggcaccagcgactttgccttgggccaggtcgccga                                     >  1:100913‑M2/1‑33 (MQ=255)                                                                                                                    aGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACAcgacga                                 >  3:129773/1‑148 (MQ=255)                                                                                                                    aGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACAcgacga                                 >  2:220513/1‑148 (MQ=255)                                                                                                                     ggCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATa                               >  5:123599/1‑149 (MQ=255)                                                                                                                     ggCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATa                               <  1:220513/149‑1 (MQ=255)                                                                                                                      gCGGTTCACGCCGAGCTTGGCATGCTCAAGGgaaccgcctgttccagccagcgccagccgatcacgcagtggccgaaggccttgaggtacaaggcagagttggccagggcaccagcgactttgccttgggccaggtcgccgagcagggc                              <  8:200307‑M2/149‑119 (MQ=255)                                                                                                                        ggTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCt                            <  4:219280/149‑1 (MQ=255)                                                                                                                               gCCGAGCTTGGCATGCTCAAGGgaaccgcctgttccagccagcgccagccgatcacgcagtggccgaaggccttgaggtacaaggcagagttggccagggcaccagcgactttgccttgggccaggtcgccgagcagggccagggttac                     >  7:200307‑M2/1‑22 (MQ=255)                                                                                                                               gCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCgg                     <  7:3787/149‑1 (MQ=255)                                                                                                                                    gCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATg                 >  5:105974/1‑148 (MQ=255)                                                                                                                                                 aaGGGAACGGGTTCTGTTCGCGACTTCTACCTCGGCAAGCTGCAAGGTGCGGGTTAATTCCTTACCTGGGAATTTCCGGGCTTCCAAAATGTCCTGGCATTGGTCGTGGCACACGTCGCTTACTTCCTCGGGATGGAATTAGGGTGGtt   <  6:105974/149‑1 (MQ=255)                                                                                                                                                    ggAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTc  >  2:263427/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACCCTGGCCCTGCTCGGCGACCTGGCCCAAGGCAAAGTCGCTGGTGCCCTGGCCAACTCTGCCTTGTACCTCAAGGCCTTCGGCCACTGCGTGATCGGCTGGCGCTGGCTGGAACAGGCGGTTCACGCCGAGCTTGGCATGCTCAAGGGAACGGCTGCTGATCGCGACTTCTACCTCGGCAAGCTGCAAGCTGCGCGTTATTTCCTGACCTGGGAAGTACCGGGCTGCCATAATGAGCTGGCATTGCTCGAGGCACACGACGATACCTGCCTCGGCATGCAAGACGGGTGGTTC  >  NC_002947/5637139‑5637432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.