Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,070,809 | G→T | 7.4% | N26K (AAC→AAA) | PP_4466 ← | TauD/TfdA family dioxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,070,809 | 0 | G | T | 7.4% | 156.7 / 3.8 | 54 | N26K (AAC→AAA) | PP_4466 | TauD/TfdA family dioxygenase |
Reads supporting (aligned to +/- strand): ref base G (22/27); new base T (2/2); total (25/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.66e-01 |
TTTCGGGTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTC > NC_002947/5070668‑5070954 | tttCGGGTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGaa < 7:275723/147‑1 (MQ=255) tttCGGGTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGaa < 7:178759/147‑1 (MQ=255) gttCGGGAGAATAACAGCTTCCCCGAAGTGATGACAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACCTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGaa < 6:175621/146‑1 (MQ=255) gTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTAGTTCAA‑GTCaaat > 1:250643/1‑147 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 8:193888/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 3:147261/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 5:35875/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGACTACGATg > 3:142175/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTAGTTGAA‑GTCAAAGCCTACGATg > 4:14588/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGAGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAATCCTACGATg > 7:134119/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGACAACTTGATGTGCAGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACAGGAGCAAGATTTTTCGTACTTCGTAGACATCATGACCATCGAAGTCGTTTAA‑GACAAAGACTACGAta > 4:242971/1‑148 (MQ=255) aGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGt < 5:6027/149‑1 (MQ=255) gCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTc > 2:43525/1‑149 (MQ=255) gTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGacac < 5:219367/149‑1 (MQ=255) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGc > 4:206422/1‑149 (MQ=255) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGGCTTTGAC‑TTCAACGACTACGATgctc > 3:223165/1‑130 (MQ=38) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGGCTTTGAC‑TTCAACGACTACGATgctc < 4:223165/133‑4 (MQ=38) ttGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCga > 7:245920/1‑149 (MQ=255) gATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGCGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCga < 4:196668/147‑1 (MQ=255) gATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCgaga > 6:327228/1‑149 (MQ=255) ctgctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGcc < 2:30617/148‑1 (MQ=255) ctgctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGcc < 8:245920/148‑1 (MQ=255) ctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGa < 3:14588/149‑1 (MQ=255) cATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATc < 8:5136/149‑1 (MQ=255) tGTCGATATCGCGGAAACGTACAACACGGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTATTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTg < 3:242971/149‑1 (MQ=255) tGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTg < 2:43204/149‑1 (MQ=255) cgcGAAATCGCGCACACCAACAACCCCCCACTGGACCCACAGTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAACCCTACGATCTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTgg < 8:230003/147‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgt < 1:139218/149‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgt < 5:309989/149‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGAAACCACTGCCATTCGAGACTGCAGTGATCTTGTTTTTGGTCAGCAtgt > 1:16837/1‑149 (MQ=255) cgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgtt > 3:58383/1‑149 (MQ=255) gAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcc < 2:46079/149‑1 (MQ=255) gTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttc > 2:321943/1‑149 (MQ=255) gTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttc < 1:43525/149‑1 (MQ=255) tACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCCTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttcc > 2:89518/1‑149 (MQ=255) aacaCCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAAGGTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGAATGCCGTGATCTTGTTTTTGGTCAGCATgttcatgttcct > 1:263735/1‑148 (MQ=255) gAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAg < 3:206422/147‑1 (MQ=255) ttCGTACTTCGGCGACATCCTGAGCTTCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtgt < 6:35875/148‑1 (MQ=255) ttCGTACTTCGGCGACATCCTGAGCATCTTAGTCGTTGAA‑GTAAAAGCCTACGATGTCCTCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATTTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtgt < 8:134119/148‑1 (MQ=255) tACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCt > 8:218157/1‑148 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCTTGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAAc > 4:14538/1‑149 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTaa < 2:250643/148‑1 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTaa < 7:218157/148‑1 (MQ=255) tCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAAcc > 6:114649/1‑148 (MQ=255) gACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGc > 4:71661/1‑149 (MQ=255) aTCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGc < 5:114649/149‑1 (MQ=255) aGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTc < 2:263735/147‑1 (MQ=255) gCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAAc < 7:193888/149‑1 (MQ=255) aTCGTAGGCTTTGAC‑TTCAACGACTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCg > 3:147033/1‑138 (MQ=255) aTCGTAGGCTTTGAC‑TTCAACGACTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCg < 4:147033/138‑1 (MQ=255) gTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGa < 4:58383/148‑1 (MQ=255) gTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGAc > 8:151041/1‑149 (MQ=255) gTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTc < 5:327228/149‑1 (MQ=255) tCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTc > 5:80798/1‑148 (MQ=255) | TTTCGGGTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTC > NC_002947/5070668‑5070954 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |