Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,070,820 | A→C | 6.7% | F23V (TTT→GTT) | PP_4466 ← | TauD/TfdA family dioxygenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,070,820 | 0 | A | C | 6.7% | 183.6 / 4.5 | 60 | F23V (TTT→GTT) | PP_4466 | TauD/TfdA family dioxygenase |
Reads supporting (aligned to +/- strand): ref base A (27/29); new base C (2/2); total (29/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01 |
GTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACAATC > NC_002947/5070674‑5070965 | gTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTAGTTCAA‑GTCaaat > 1:250643/1‑147 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 8:193888/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 3:147261/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATg > 5:35875/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGACTACGATg > 3:142175/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTAGTTGAA‑GTCAAAGCCTACGATg > 4:14588/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGAGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAATCCTACGATg > 7:134119/1‑149 (MQ=255) cAGCTTCCCCGAAGTGATGAGACAACTTGATGTGCAGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACAGGAGCAAGATTTTTCGTACTTCGTAGACATCATGACCATCGAAGTCGTTTAA‑GACAAAGACTACGAta > 4:242971/1‑148 (MQ=255) aGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGt < 5:6027/149‑1 (MQ=255) gCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTc > 2:43525/1‑149 (MQ=255) gTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGacac < 5:219367/149‑1 (MQ=255) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGc > 4:206422/1‑149 (MQ=255) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGGCTTTGAC‑TTCAACGACTACGATgctc > 3:223165/1‑130 (MQ=38) agagaACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGGCTTTGAC‑TTCAACGACTACGATgctc < 4:223165/133‑4 (MQ=38) ttGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCga > 7:245920/1‑149 (MQ=255) gATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGCGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCga < 4:196668/147‑1 (MQ=255) gATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCgaga > 6:327228/1‑149 (MQ=255) ctgctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGcc < 2:30617/148‑1 (MQ=255) ctgctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGcc < 8:245920/148‑1 (MQ=255) ctCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGa < 3:14588/149‑1 (MQ=255) cATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATc < 8:5136/149‑1 (MQ=255) tGTCGATATCGCGGAAACGTACAACACGGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTATTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTg < 3:242971/149‑1 (MQ=255) tGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTg < 2:43204/149‑1 (MQ=255) cgcGAAATCGCGCACACCAACAACCCCCCACTGGACCCACAGTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAACCCTACGATCTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTgg < 8:230003/147‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgt < 5:309989/149‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgt < 1:139218/149‑1 (MQ=255) gcgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGAAACCACTGCCATTCGAGACTGCAGTGATCTTGTTTTTGGTCAGCAtgt > 1:16837/1‑149 (MQ=255) cgGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgtt > 3:58383/1‑149 (MQ=255) gAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcc < 2:46079/149‑1 (MQ=255) gTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttc > 2:321943/1‑149 (MQ=255) gTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttc < 1:43525/149‑1 (MQ=255) tACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCCTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCAtgttcctgttcc > 2:89518/1‑149 (MQ=255) aacaCCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAAGGTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGAATGCCGTGATCTTGTTTTTGGTCAGCATgttcatgttcct > 1:263735/1‑148 (MQ=255) gAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAg < 3:206422/147‑1 (MQ=255) ttCGTACTTCGGCGACATCCTGAGCTTCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtgt < 6:35875/148‑1 (MQ=255) ttCGTACTTCGGCGACATCCTGAGCATCTTAGTCGTTGAA‑GTAAAAGCCTACGATGTCCTCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATTTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtgt < 8:134119/148‑1 (MQ=255) tACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCt > 8:218157/1‑148 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCTTGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAAc > 4:14538/1‑149 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTaa < 7:218157/148‑1 (MQ=255) cTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTaa < 2:250643/148‑1 (MQ=255) tCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAAcc > 6:114649/1‑148 (MQ=255) gACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGc > 4:71661/1‑149 (MQ=255) aTCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGc < 5:114649/149‑1 (MQ=255) aGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTc < 2:263735/147‑1 (MQ=255) gCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAAc < 7:193888/149‑1 (MQ=255) aTCGTAGGCTTTGAC‑TTCAACGACTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCg < 4:147033/138‑1 (MQ=255) aTCGTAGGCTTTGAC‑TTCAACGACTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCg > 3:147033/1‑138 (MQ=255) gTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGa < 4:58383/148‑1 (MQ=255) gTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGAc > 8:151041/1‑149 (MQ=255) gTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTc < 5:327228/149‑1 (MQ=255) tCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTc > 5:80798/1‑148 (MQ=255) ttGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAAATCGACTTCCaa > 5:25373/1‑148 (MQ=255) tGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtg > 5:191283/1‑111 (MQ=255) tGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCtg < 6:191283/111‑1 (MQ=255) aa‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATaa < 1:321943/148‑1 (MQ=255) a‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACa < 6:25373/149‑1 (MQ=255) gTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACaa > 4:40576/1‑149 (MQ=255) tCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTa > 4:81070/1‑99 (MQ=255) tCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTa < 3:81070/99‑1 (MQ=255) tCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACAAt > 5:297619/1‑149 (MQ=255) cAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCGTGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACAAt < 3:14538/148‑1 (MQ=255) aaaGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCGTGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACAATc > 3:59838/1‑148 (MQ=255) | GTGAATAACAGCTTCCCCGAAGTGATGAGAGAACTTGATGTGCTGCTCATCGGTAATGTCGATATCGCGGAAACGTACAACACCGTACTGGAGCCAGATTTTTCGTACTTCGGCGACATCCTGAGCATCGTAGTCGTTGAA‑GTCAAAGCCTACGATGTCCGCGCAGACACCACTGCCATTCGAGACTGCCGTGATCTTGTTTTTGGTCAGCATGTTCCTGTTCCTCACCAGCTGAAGGTTACGATCTGTGCCTAACCTACAGCGGCATTCAACTCGACTTCCAATAACAATC > NC_002947/5070674‑5070965 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |