Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,143,641 | C→G | 7.9% | G48A (GGC→GCC) | PP_4527 ← | DMT superfamily permease |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,143,641 | 0 | C | G | 7.9% | 154.7 / 5.0 | 51 | G48A (GGC→GCC) | PP_4527 | DMT superfamily permease |
Reads supporting (aligned to +/- strand): ref base C (24/22); new base G (2/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01 |
CGCCGAGGTCAGTTTCAGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGG > NC_002947/5143493‑5143789 | cgccgAGGTCAGTTTCAGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGc < 2:38327/149‑1 (MQ=255) gAGGTCAGTTTCAGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCAtt < 8:196691/149‑1 (MQ=255) cAGTTTCAGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTg‑cg > 4:291791/1‑147 (MQ=255) aGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACTGC‑GCAATGGCATTGCCGCTGtgctg < 3:235183/148‑1 (MQ=255) aGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGtgctgc < 5:305451/149‑1 (MQ=255) cccTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCtt < 3:291791/149‑1 (MQ=255) ttCGGCAATGAACAGAAACTCCACCCCGAACAGCACGCCCGCCACCAGCCCTGTGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGc > 7:277621/1‑148 (MQ=255) gCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCAc > 3:304146/1‑149 (MQ=255) gAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGACCTGCGCGCCAGGTGCTGCCGACATGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGgcg > 6:3302/1‑149 (MQ=255) aCAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGTCATTG‑CGCAGTGCTGCTTGCATCACCGgcgc < 4:28595/148‑1 (MQ=255) cAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGa > 2:42854/1‑149 (MQ=255) gAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATg > 8:216844/1‑149 (MQ=255) cACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGAcgg > 3:301841/1‑149 (MQ=255) gcccgcccGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCTGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTg < 1:42854/149‑1 (MQ=255) gcccgcccGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTg < 4:304146/149‑1 (MQ=255) cgcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATc < 3:131056/149‑1 (MQ=255) gcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa < 7:216844/149‑1 (MQ=255) gcccgccACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa < 2:207662/149‑1 (MQ=255) gCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa > 3:70128/1‑138 (MQ=255) gCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCa < 4:70128/138‑1 (MQ=255) cgcgcCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTCCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGccc > 8:285666/1‑149 (MQ=255) gTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAg < 3:56020/149‑1 (MQ=255) gctgACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCa > 8:43463/4‑147 (MQ=255) cGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAgg > 6:325679/1‑149 (MQ=255) ccTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGcc > 1:293601/1‑148 (MQ=255) cTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCa < 1:288734/149‑1 (MQ=255) cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTAcc > 4:166669/1‑143 (MQ=255) cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTAcc < 3:166669/143‑1 (MQ=255) cccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAg > 7:74038/1‑149 (MQ=255) ccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCt < 5:295351/143‑1 (MQ=255) ccGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCt > 6:295351/1‑143 (MQ=255) cGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAgg > 7:10920/1‑148 (MQ=255) cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt < 5:325679/149‑1 (MQ=255) cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt < 5:3302/149‑1 (MQ=255) cagcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGt > 4:297495/1‑149 (MQ=255) agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CTCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGt < 5:201213/90‑1 (MQ=255) agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTc < 8:277621/149‑1 (MQ=255) agcaTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CACAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGt > 6:201213/1‑90 (MQ=255) caTCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTg > 6:294423/1‑149 (MQ=255) tCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTggg > 5:236964/1‑149 (MQ=255) aGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGt < 4:301841/148‑1 (MQ=255) ccTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCtt > 5:197852/1‑149 (MQ=255) aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGTCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAc > 2:158525/1‑149 (MQ=255) aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTgg > 4:285695/1‑84 (MQ=25) aGCACTGC‑GCAATGGCATTGCCGCTGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTgg < 3:285695/84‑1 (MQ=25) gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc < 3:297495/149‑1 (MQ=255) gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc > 7:253188/1‑149 (MQ=255) gCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGAcc < 7:285666/149‑1 (MQ=255) cacaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGGAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcg < 8:253188/149‑1 (MQ=255) cacaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcg < 8:10920/149‑1 (MQ=255) acaGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACcgc > 5:125780/1‑149 (MQ=255) gCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCgcgc > 3:149325/1‑148 (MQ=255) ccATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCgg > 3:285919/1‑149 (MQ=255) | CGCCGAGGTCAGTTTCAGCCCTTCGGCAATGAACAGAAACTCCACCCCGAACAGCCCGCCCGCCACCAGCCCTGCGCGCCAGGTGCTGCCGACCTGCTCCCAGCCACCCCGCCAGCACAGCATCAGGCCTACCAGCACAGCGGCAATGCCATTG‑CGCAGTGCTGCTTGCATCACCGGCGCGATGTCGACGGCGGCGGTCTTGATCAGTACCTGCTGGCAGCCCCAGATCAGGCAAAGGCCCAGCATTACCTGGAAGGCAAAGGCGTCTGGGTTCTTGCGGACCGCGCTCATAAGCGG > NC_002947/5143493‑5143789 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |